Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq345 515 5e-141 seq43 453 1e-122 seq404 389 5e-103 seq51 100 4e-16 >seq345 Length=1218342 Score = 515 bits (570), Expect = 5e-141 Identities = 651/890 (73%), Gaps = 6/890 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| ||||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| ||| ||| | | ||| | | || Sbjct 657230 CCAAGGTTAGCACGGTTAATAATA--TCAGCCCAGGTATTAATTACATGACCTTGACTAT 657287 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || |||||||| || || || | || ||||| || |||| |||| |||||| | Sbjct 657288 CAACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTA 657347 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 || | | ||||||| || ||| || || || ||||| | |||||| || | | | | Sbjct 657348 AAGCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAG 657407 Query 8120 TGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 |||||| ||| | ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 657408 AGTTGTTGGAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 657466 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 |||||||| || ||||| |||||||| || | ||||| | || ||| || | ||| Sbjct 657467 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 657526 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 || || || ||||| | | ||| || || || ||||| |||||||||||||| || || Sbjct 657527 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 657586 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| Sbjct 657587 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 657646 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||||| Sbjct 657647 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 657706 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || |||||||||| |||||| | ||||| || || |||||| | || ||||| Sbjct 657707 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 657766 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538 |||||| ||| ||||| || | |||||| || ||| | | ||||||| | | Sbjct 657767 GAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGA 657826 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 ||||||||| || | |||| | |||||| | | || | || ||| ||||| || Sbjct 657827 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 657886 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || || ||||| ||||| | | || |||||||| || || || || || || || ||| Sbjct 657887 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATA 657946 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 || | |||| |||| | |||||||| || || ||||||||||| | | || | Sbjct 657947 GCTGTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTA 658006 Query 8719 GCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAA 8768 | |||||||||||||||||| || ||||| || || || |||||||| || Sbjct 658007 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAA 658056 >seq43 Length=3080068 Score = 453 bits (502), Expect = 1e-122 Identities = 561/765 (73%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 7987 TTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATT 8046 ||| | || |||||||| || |||||||| || || || || || ||||| || ||||| Sbjct 2030410 TTATCCTTGACATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATA 2030469 Query 8047 GTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAG 8106 |||| |||||| | || ||| ||||||| || ||| || || | | ||| |||||||| Sbjct 2030470 GTGCTAATACCTAAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAA 2030529 Query 8107 TGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCC 8165 || | | | | |||||| |||| | ||||| |||||||| |||| ||||| || || Sbjct 2030530 TGTAAAGAACGAGAGTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACC 2030588 Query 8166 ATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTG 8225 ||||||||| || |||||||| || ||||| |||||||| || | ||||| | || Sbjct 2030589 ATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGC 2030648 Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 ||| || | ||| || || || ||||| | | ||| || || || ||||| |||||||| Sbjct 2030649 AGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGC 2030708 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 |||||| || || || ||||| | ||| ||||| ||| ||| || || || |||||||| Sbjct 2030709 ACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAG 2030768 Query 8346 AATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGG 8405 ||||| ||||| || |||||||| | ||| ||||| || |||||||| || |||||||| Sbjct 2030769 GATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGG 2030828 Query 8406 CATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGC 8465 ||| |||||||| || |||||||||| |||||| | ||||| || || |||||| Sbjct 2030829 CATACCATCAGAAAAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGC 2030888 Query 8466 AGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA 8525 | || ||||| |||||| ||| ||||| || | |||||| | ||| | | Sbjct 2030889 TGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAG 2030948 Query 8526 CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTG 8585 ||||||| | |||||||||| || | |||| | |||||| || | || | || Sbjct 2030949 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTC 2031008 Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| |||| || ||||| ||||| ||||| | | || |||||||| || || || || Sbjct 2031009 ATAAGGACTGCCATTATATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAA 2031068 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 || || || ||||| |||| |||| | |||||||| || || ||||||||||| Sbjct 2031069 ATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATA 2031128 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGAC 8750 | | || || | |||||||||||||||||| || ||||| || Sbjct 2031129 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 389 bits (430), Expect = 5e-103 Identities = 528/729 (72%), Gaps = 8/729 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 543775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 543834 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 543835 GCACGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAG 543892 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || ||||| || ||||| |||| |||||| | || ||| | Sbjct 543893 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGA 543952 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-A 8127 ||||| || ||| | || | | ||| |||||||| || | | | | |||||| | Sbjct 543953 GCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGA 544012 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 ||| | ||||| |||||||| |||| ||||| || ||||||||||| || |||||||| Sbjct 544013 AACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAA 544071 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||| |||||||| || | ||||| | || ||| || | ||| || || || Sbjct 544072 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 544131 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| |||||||||||||| || || || ||||| Sbjct 544132 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 544191 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||| Sbjct 544192 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 544251 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||| ||||| || |||||||| || ||||||||||| |||||||| || ||| Sbjct 544252 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCC 544311 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||||| |||||| | ||||| || || ||||| | || || || |||||| Sbjct 544312 TGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAATATGCA 544371 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 | | ||||| || | |||||| || ||| | | ||||||| | || || || Sbjct 544372 ATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT-TATATATATATAT 544430 Query 8548 GCAGAAAT-TCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAA 8606 | | || |||| | |||||| | | || | || ||| ||||| || || || || Sbjct 544431 ATATATATCACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAA 544490 Query 8607 CCACTCATC 8615 ||| ||||| Sbjct 544491 CCATTCATC 544499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 |||||||| || || ||||||||||| | | || || | |||||||||||||||||| Sbjct 545780 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 545839 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799 || ||||| || || || |||||||| || || | ||||| || || || | || Sbjct 545840 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 545899 Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACC 8831 || ||| ||||| | ||| |||||||| || Sbjct 545900 AAAGTAGGGATCATCAAAACACCAAACCATCC 545931 >seq51 Length=2912257 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 ||||| | |||||| |||||| |||| || ||||||||||| ||| ||||||| | ||| Sbjct 983244 GCATATTAGAAGATCAATCTATCAAAATAACCATGAGCAGCTACATTATTATAAATTTCT 983303 Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 | |||||| | || || |||| | || ||| || | || | || |||||||| Sbjct 983304 TTCTCTTGATCGAATTTGTAACATTCATTAGTAGATTCATTTTTTATGGTTTCTCTGATC 983363 Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAA 8291 | | ||| || ||||| |||| |||||||||||||| Sbjct 983364 AAATTAGAAGTTACTAAGAAACCATGCATAGCACTGAA 983401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615805032417440