Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq345 479 8e-131 seq43 423 6e-114 seq404 390 3e-104 seq1475 84.2 6e-12 >seq345 Length=1218342 Score = 479 bits (530), Expect = 8e-131 Identities = 640/890 (72%), Gaps = 0/890 (0%) Strand=Plus/Minus Query 41327 TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTC 41386 ||||||||| | || ||| || || || || || || ||||| || || ||||| || Sbjct 658068 TTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 658009 Query 41387 GCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAAT 41446 || | || || | ||||| ||||| || || || || ||| | |||| | || Sbjct 658008 TCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACA 657949 Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || || || | || || |||||||| |||||||| || | ||||||||||| | ||| Sbjct 657948 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 657889 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATG 41566 || |||||||| | | || | || | |||||| | |||| || | ||||||| Sbjct 657888 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 657829 Query 41567 GGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTAC 41626 || || |||||||||||||| | || | || ||| | || ||||| |||||| || Sbjct 657828 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 657769 Query 41627 TCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCT 41686 || |||||||| || ||||| |||||||| ||| | ||||||| |||| ||||| Sbjct 657768 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGC 657709 Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 |||||||||| |||||| | || || || || || ||||||| ||| | || |||||| Sbjct 657708 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 657649 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 ||||||||||| || |||||||| || ||||||||| | || || || || ||||| || Sbjct 657648 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 657589 Query 41807 GGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACG 41866 || | ||| ||||||||| ||| | |||| || || | || | || || Sbjct 657588 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 657529 Query 41867 ACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAAT 41926 || ||| | | || || | ||||||| || |||||||||||||| ||||| ||| Sbjct 657528 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 657469 Query 41927 ATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAAT 41986 || || |||||||| || |||||||| || | ||||||||||||||||| | || || Sbjct 657468 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAAC 657409 Query 41987 TCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCG 42046 || ||| | | |||||||| | ||| | | |||||| |||||||||||||| ||| Sbjct 657408 TCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCT 657349 Query 42047 CTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTA 42106 | || | || |||| ||||||| | |||| |||||| || ||||||||| | | Sbjct 657348 TTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTT 657289 Query 42107 GCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGC 42166 | | | | || || || || || ||||||||||| ||| |||||||||| |||||||| Sbjct 657288 GATAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGT 657229 Query 42167 TTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || |||||||| || || || || |||||||| || ||||| || Sbjct 657228 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 657179 >seq43 Length=3080068 Score = 423 bits (468), Expect = 6e-114 Identities = 540/744 (73%), Gaps = 0/744 (0%) Strand=Plus/Minus Query 41357 GTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATC 41416 || || || ||||| || || ||||| || |||| || || | ||||| ||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 41417 ATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGG 41476 || || || ||| | |||| | | || || || | || || |||||||| ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 41477 GAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTC 41536 ||||| || | ||||||||||| | || || ||| |||| | | || | || || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 41537 CACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 41596 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 41597 GGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTG 41656 || ||| | || ||||| |||||| || || |||||||| || ||||| |||||||| Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 41657 TTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCC 41716 ||| | ||||||| |||| ||||| |||||||||| |||||| | || || || Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 41717 GGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTT 41776 || || ||||||| ||| | || ||||||||||||||||| || |||||||| || ||| Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 41777 CACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGC 41836 |||||| | || || || || ||||| || || | ||| ||||||||| ||| | Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 41837 CTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTAC 41896 |||| || || | || | || || || ||| | | || || | |||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 41897 AAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGG 41956 | || |||||||||||||| ||||| ||||| || |||||||| || |||||||| || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 41957 CTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCC 42016 | ||||||||||||||||| || || || || ||| | | |||||||| || ||||| Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 42017 TGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTG 42076 |||||||| |||||||||||||| |||| | || | || |||||||||||| | Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 42077 AATGGTTTCAACTTTAACCAATCT 42100 ||||||||||| || ||||||||| Sbjct 2030453 AATGGTTTCAATTTCAACCAATCT 2030430 >seq404 Length=1096556 Score = 390 bits (432), Expect = 3e-104 Identities = 525/728 (72%), Gaps = 2/728 (0%) Strand=Plus/Minus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTG 41549 ||||||||||| | ||||| |||||||| | | || | || | |||||| | ||| Sbjct 544501 TTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTG 544442 Query 41550 GCG-TCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCC 41608 | | | | | || || | ||||||||||||| | || | || ||| | || Sbjct 544441 GTGATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCT 544383 Query 41609 TGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTAT 41668 ||||| | |||| || || || ||||| || |||| |||||||| ||| | ||||| Sbjct 544382 TGGATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTTAT 544323 Query 41669 CCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAAC 41728 || |||| ||||| |||||||||| |||||| | || || || || || |||||| Sbjct 544322 CCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 544263 Query 41729 TACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGT 41788 | ||| | || ||||||||||||||||| || |||||||| || ||||||||| | || Sbjct 544262 TTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 544203 Query 41789 GTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCG 41848 || || || ||||| || || | ||| ||||||||| ||| | |||| || || Sbjct 544202 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 544143 Query 41849 TCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAA 41908 | || | || || || ||| | | || || | ||||||| || |||||| Sbjct 544142 AGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAA 544083 Query 41909 GAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAA 41968 |||||||| ||||| ||||| || |||||||| || |||||||| || | ||||||||| Sbjct 544082 GAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAA 544023 Query 41969 TATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTA 42028 |||||||| || || || || ||| | | |||||||| || ||||| ||||||| ||| Sbjct 544022 TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTA 543963 Query 42029 GGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAAC 42088 ||||||||| | |||| | || | || |||||||||||| | ||||||||||| Sbjct 543962 GGTATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 543903 Query 42089 TTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTT 42148 || ||||||||| | | | | | | || | || || || ||||||||||| ||| || Sbjct 543902 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATT 543843 Query 42149 AACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTT 42208 |||||||| |||||||| | || || |||||||| || || || || |||||||| || Sbjct 543842 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 543783 Query 42209 GACCTTGC 42216 ||||| || Sbjct 543782 GACCTAGC 543775 >seq1475 Length=110218 Score = 84.2 bits (92), Expect = 6e-12 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 41960 ATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTT--CATTTCTTTCTTGCTGCCT 42017 ||||||||||||||||| || || || || | ||||| ||||||| | | |||| | Sbjct 47115 ATCTTCCAATATGCTAGTTTCAACAACTCTC--TGTCTTCACATTTCTCTATATCTGCTT 47172 Query 42018 GGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGA 42077 ||||| | |||||||||||||| ||| | || | || |||||||||||| | | Sbjct 47173 GGCCTATAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAA 47232 Query 42078 ATGGTTTCAACTTTAACCAATC 42099 ||||||| | || ||| |||| Sbjct 47233 ATGGTTTTGATTTCAACTAATC 47254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146201461122208