Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq345 520 3e-143 seq43 435 9e-118 seq404 379 6e-101 >seq345 Length=1218342 Score = 520 bits (576), Expect = 3e-143 Identities = 663/909 (73%), Gaps = 3/909 (0%) Strand=Plus/Minus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| || ||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 658073 CTGTATTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAAC 658014 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496 |||| ||| | ||||| || ||||| ||||| || || ||||||||| | | |||| Sbjct 658013 CTGTTTCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTT 657954 Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGC 42556 || || || || | ||||| || | || |||||||| || |||| |||||| Sbjct 657953 CTACAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGT 657894 Query 42557 TCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTT 42616 | ||||||||||| |||||| |||| | || | |||||| | | ||| | | || Sbjct 657893 TATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTT 657834 Query 42617 ACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTG 42676 || |||| || || ||||||||| | ||| | || ||| | || ||||| ||||| Sbjct 657833 ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTG 657774 Query 42677 CTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736 | || || || ||||| || || || ||||| || ||| | | |||||| |||| || | Sbjct 657773 CATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGG 657714 Query 42737 GTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCT 42796 | ||||| ||||| |||||||| || || || ||||| |||||||| ||| | || | Sbjct 657713 GAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTAT 657654 Query 42797 TCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTAT 42856 |||||||||| || ||||| |||||||| || || || ||| | || || || || |||| Sbjct 657653 TCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTAT 657594 Query 42857 TTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTG 42916 | || || || | ||| |||||||||||| | || |||||| | | | | | Sbjct 657593 TCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGG 657534 Query 42917 AAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTT 42976 |||| || ||||| ||| ||| | || |||| |||||||||||||| || |||| Sbjct 657533 AAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTT 657474 Query 42977 ATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT- 43035 |||| || || || || |||||||| ||||| || | |||||||||||||| | ||| Sbjct 657473 ATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTCC 657415 Query 43036 AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTC 43095 || || ||| | |||||| ||||| | || ||| ||| || || || ||||||||| Sbjct 657414 AACAACTCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTC 657355 Query 43096 ACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCA 43155 | | || | || | || ||||||| || ||| | |||| ||| || || |||||||| Sbjct 657354 ATTGCTTTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCT 657295 Query 43156 CTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAAC 43215 | ||||||| ||| |||||| || ||| |||||||||||| | || ||||| ||| Sbjct 657294 GTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAAC 657235 Query 43216 CTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCC 43275 ||||| | || || ||||| || || ||||| ||||||||||| || || || || | Sbjct 657234 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 657175 Query 43276 GTGGAGGTT 43284 || || ||| Sbjct 657174 GTTGAAGTT 657166 Score = 104 bits (114), Expect = 7e-18 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 658228 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 658169 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||||||||| Sbjct 658168 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 658110 Query 42399 TGCTGCCCCTCCGGTAGACATTGATG 42424 |||||||||||||||||| ||||||| Sbjct 658109 TGCTGCCCCTCCGGTAGATATTGATG 658084 >seq43 Length=3080068 Score = 435 bits (482), Expect = 9e-118 Identities = 551/755 (73%), Gaps = 2/755 (0%) Strand=Plus/Minus Query 42411 GGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACAT 42470 |||||| |||||||| |||||||||||||| ||||| ||||| || ||||| ||||| || Sbjct 2031174 GGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATAT 2031115 Query 42471 CATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTG 42530 || ||||||||| | | |||| | || || || | ||||| || | || || Sbjct 2031114 TATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATG 2031055 Query 42531 GGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTT 42590 |||||| || |||| |||||| | || |||||| | |||||| |||| | || || Sbjct 2031054 GGAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTT 2030995 Query 42591 CCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACT 42650 |||||| | | ||| | | |||| |||| || || ||||||||| | ||| || Sbjct 2030994 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 2030935 Query 42651 TGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGT 42710 || ||| | || ||||| |||||| || || || ||||| || || || ||||| || Sbjct 2030934 GGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 2030875 Query 42711 CTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTC 42770 ||| | | |||||| |||| || || ||||| ||||| |||||||| || || || Sbjct 2030874 TTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTC 2030815 Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 ||||| |||||||| ||| | || ||||||||||| || ||||| |||||||| || || Sbjct 2030814 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 2030755 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 || ||| | || || || || ||||| || || || | ||| |||||||||||| Sbjct 2030754 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 2030695 Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950 | || |||||| | | | | ||||| || ||||| ||| ||| | || || Sbjct 2030694 CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 2030635 Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 || |||||||||||||| || |||||||| || || || || |||||||| ||||| || Sbjct 2030634 CAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCG 2030575 Query 43011 GCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCG 43069 | |||||||||||||| | |||| || || ||| ||||| || ||||| || || | Sbjct 2030574 ATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTG 2030516 Query 43070 CTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACT 43129 ||||||| || || || |||||||||||| || | || | || |||||||| || ||| Sbjct 2030515 CTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACC 2030456 Query 43130 TGAATGGTTTTAACTTTAACCAATCACTTGTTGAT 43164 | |||||||| || || |||||||| | |||||| Sbjct 2030455 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 2030421 >seq404 Length=1096556 Score = 379 bits (420), Expect = 6e-101 Identities = 535/744 (72%), Gaps = 8/744 (1%) Strand=Plus/Minus Query 42545 TTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG 42604 |||| |||||| | ||||||||||| |||||| |||| | || | |||||| | | | Sbjct 544501 TTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTG 544442 Query 42605 GT-ATCT-TCTCT-TACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGC 42661 || || | | | | || | | | ||||||||| | ||| | || ||| | | Sbjct 544441 GTGATATATATATATATAT---ATATAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCC 544385 Query 42662 CCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCT 42721 | ||||| | |||| || || || ||||| || | || ||||| || ||| | | | Sbjct 544384 CTTGGATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTT 544325 Query 42722 ATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCA 42781 ||||| |||| || || ||||| ||||| |||||||| || || || ||||| |||| Sbjct 544324 ATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 544265 Query 42782 ACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTG 42841 |||| ||| | || ||||||||||| || ||||| |||||||| || || || ||| | | Sbjct 544264 ACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAG 544205 Query 42842 GTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCT 42901 | || || || ||||| || || || | ||| |||||||||||| | || |||| Sbjct 544204 GCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 544145 Query 42902 CTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTC 42961 || | | | | ||||| || ||||| ||| ||| | || |||| ||||||| Sbjct 544144 CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTC 544085 Query 42962 AAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCC 43021 ||||||| || |||||||| || || || || |||||||| ||||| || | ||||||| Sbjct 544084 AAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC 544025 Query 43022 AATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTT 43080 ||||||| | |||| || || ||| ||||| || ||||| || || |||||||| | Sbjct 544024 AATATGC-TAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAA 543966 Query 43081 GTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTT 43140 || || |||||| ||||| || | || | || |||||||| || ||| | |||||||| Sbjct 543965 GTAGGTATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTC 543906 Query 43141 AACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATT 43200 || || |||||||| | ||||||| ||| || ||| || ||| |||||||||||| Sbjct 543905 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATT 543846 Query 43201 TTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCG 43260 | || ||||| |||||||| | || || ||||| || || ||||| ||||||||||| Sbjct 543845 ATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCT 543786 Query 43261 CTTGATCTTGCATCCGTGGAGGTT 43284 || || || || | || || ||| Sbjct 543785 CTAGACCTAGCTGCTGTCGAAGTT 543762 Score = 143 bits (158), Expect = 8e-30 Identities = 131/163 (80%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 42321 TCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTG 42380 || ||| |||| ||||||||||| ||||||| || | | | | || || | || Sbjct 545941 TCGTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TG 545883 Query 42381 T-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTG 42439 | |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 545882 TATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTG 545823 Query 42440 TCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGC 42482 | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 545822 TTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGC 545780 Score = 113 bits (124), Expect = 1e-20 Identities = 119/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 546090 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 546031 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||||||||| Sbjct 546030 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 545972 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGT 42432 |||||||||||||||||| |||||||| |||||| Sbjct 545971 TGCTGCCCCTCCGGTAGATATTGATGGTATTCGT 545938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143520098423696