Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq345 428 1e-115 seq43 379 6e-101 seq404 365 1e-96 >seq345 Length=1218342 Score = 428 bits (474), Expect = 1e-115 Identities = 624/879 (71%), Gaps = 2/879 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 657179 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 657238 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| | || | | ||| ||||| || Sbjct 657239 GCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGAT 657298 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||| |||||||||| || |||| |||| ||||| | || | | | Sbjct 657299 TGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAAGCAATGAAC 657358 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||| ||||||| | |||||||| | | |||| ||| || || Sbjct 657359 CAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAGTTGTTGGAA 657418 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 657419 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 657478 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 657479 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 657538 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 657539 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 657598 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 657599 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 657658 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| ||| || || || Sbjct 657659 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGA 657718 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 657719 CCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 657778 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || | | | || |||||||||| | || || Sbjct 657779 GCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 657838 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 657839 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 657898 Query 26597 TCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || ||||||||||| | || || || |||| | Sbjct 657899 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGTAGAAGT 657957 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || | ||||| || || Sbjct 657958 AGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTAGAAACAGGTTC 658017 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAA 26754 ||| || ||||| |||||||| || || || || ||||| Sbjct 658018 ACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAA 658056 >seq43 Length=3080068 Score = 379 bits (420), Expect = 6e-101 Identities = 541/759 (71%), Gaps = 2/759 (0%) Strand=Plus/Plus Query 25979 TTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAG 26038 || ||||| ||||| || ||||| || || |||||||||||||| || ||||| |||| Sbjct 2030416 TTGACATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTA 2030475 Query 26039 ATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGA 26098 ||||| | || || | ||| || || || || ||||||| ||| || |||||||| | | Sbjct 2030476 ATACCTAAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 2030535 Query 26099 GAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCA 26158 ||||| ||| || ||||| ||||| || || || |||| ||||| || || || ||| Sbjct 2030536 GAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCA 2030595 Query 26159 GCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACT 26218 || || |||||||| || ||||| ||||| || || | || || | ||| || | Sbjct 2030596 GCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 2030655 Query 26219 TCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAA 26278 | ||||| ||||| || | || || ||||| || ||||||||| ||| Sbjct 2030656 TTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAAT 2030715 Query 26279 AGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTA 26338 || | || ||||| || ||||| || || ||| || ||||||||||| || || || Sbjct 2030716 AGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTG 2030775 Query 26339 TGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCA 26398 || || || |||||||| | ||||||||| |||||||||||||| || |||||||| ||| Sbjct 2030776 TGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA 2030835 Query 26399 TCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGT 26458 ||| ||| || || || || | ||||||| ||||| || || ||| || | | Sbjct 2030836 TCAGAAAAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACA 2030895 Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| || | ||| || || | | || ||||||||| Sbjct 2030896 GGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCAC 2030955 Query 26519 TGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGT 26578 | | || || ||||| || | ||||||||| || | ||| || | ||| || Sbjct 2030956 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGA 2031015 Query 26579 CCGCCATTGTATAGCCACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAG 26637 | |||||| |||| ||| || || | | |||| |||||||| || ||||||||||| | Sbjct 2031016 CTGCCATTATATAACCATTCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAATGCAA 2031074 Query 26638 TCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAA 26697 || || || ||| | || | | || || || || ||||||||||| || | || Sbjct 2031075 ACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAG 2031134 Query 26698 CGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTAC 26736 || || ||||| || ||||| || ||||| |||||||| Sbjct 2031135 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 365 bits (404), Expect = 1e-96 Identities = 518/726 (71%), Gaps = 2/726 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 543775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 543834 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 543835 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 543894 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| ||||| | || || ||| Sbjct 543895 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAGC 543954 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || | ||||||| ||| || |||||||| | |||||| ||| || ||| Sbjct 543955 CAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 544014 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 544015 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 544074 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 544075 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 544134 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 544135 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 544194 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 544195 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 544254 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| ||| || || || Sbjct 544255 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGA 544314 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||||| ||||| || || ||| | | | ||||||| |||||||| | Sbjct 544315 CCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAATATGCAATA 544374 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || | | | || |||||||||| | | | |||| Sbjct 544375 GTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT-TATATATATATATATA 544433 Query 26537 GCTA-CTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 || | || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 544434 TATATCACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCA 544493 Query 26596 CTCGTC 26601 || || Sbjct 544494 TTCATC 544499 Score = 82.4 bits (90), Expect = 2e-11 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 26664 CTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGC 26723 |||| || || || ||||||||||| || | || || || ||||| || ||||| || | Sbjct 545778 CTGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATAC 545837 Query 26724 CATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-C 26781 |||| |||||||| || || || || ||||| || | ||||| ||| | ||| || | | Sbjct 545838 CATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTC 545896 Query 26782 GAGTAAGCAGGGTATCATAAGCACCCCGAACCATCC 26817 | ||| |||| ||||| | || || |||||||| Sbjct 545897 AATAAAGTAGGG-ATCATCAAAACACCAAACCATCC 545931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147698928595840