Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq345 551 6e-152 seq43 468 6e-127 seq404 432 4e-116 >seq345 Length=1218342 Score = 551 bits (610), Expect = 6e-152 Identities = 664/902 (74%), Gaps = 6/902 (1%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| || | ||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 658068 TTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 658009 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 || | ||| || | ||||| ||||| || || |||||||| || | |||| ||| | Sbjct 658008 TCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACA 657949 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | || || || || || |||||||| ||| | ||||||| ||||| ||| Sbjct 657948 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 657889 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 ||||| ||||||| | || | || | |||||| | | || | | ||| Sbjct 657888 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 657829 Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || |||| | || ||||| |||||||| ||||||||| Sbjct 657828 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 657769 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || || | ||||| ||||| ||| | ||||||| | ||||| || Sbjct 657768 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGC 657709 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 657708 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 657649 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| |||||||||||||| || |||||| | || ||||| ||||| ||||| Sbjct 657648 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 657589 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601 || || || ||| ||||||||| ||||| ||||| || ||| | ||| | ||||| Sbjct 657588 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 657529 Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661 || || | || ||| || | ||||||| ||||| ||||| |||||||||||||| Sbjct 657528 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 657469 Query 155662 ATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAAC 155721 || || ||||||||||| || || || || | |||||||| ||||| | ||||||| Sbjct 657468 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAAC 657409 Query 155722 TCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCT 155781 || | | | || |||||| | ||| | | |||||| || | || ||| | |||| Sbjct 657408 TCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCT 657349 Query 155782 ATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTA 155841 | ||| | || |||| |||||||| || | |||||| |||||||| |||||||| Sbjct 657348 TTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTT 657289 Query 155842 GACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTT 155898 || |||| ||| | || || ||| ||||| || ||| ||||||| ||| ||| Sbjct 657288 GA---TAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTT 657232 Query 155899 GGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCT 155958 ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||||||| | Sbjct 657231 GGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTT 657172 Query 155959 GA 155960 || Sbjct 657171 GA 657170 >seq43 Length=3080068 Score = 468 bits (518), Expect = 6e-127 Identities = 555/752 (74%), Gaps = 0/752 (0%) Strand=Plus/Minus Query 155092 GTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATC 155151 ||||| |||||||||||||||||||| || |||| ||| || | ||||| ||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 155152 ATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGG 155211 || |||||||| || | |||| ||| || || ||| | || || || || || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 155212 GAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTC 155271 ||||| ||| | ||||||| ||||| || ||||| |||||| | || | || || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 155272 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTT 155331 |||||| | | || | | ||| |||||| ||||||||||| || |||||| Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTA 155391 || ||||| |||||||| ||||||||| || || || || | ||||| ||||| Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 155392 TTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCT 155451 ||| | ||||||| | ||||| || || ||||||| |||||||| || |||||| Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 |||||||| |||| |||| | || ||||| || || ||||| |||||||||||||| || Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| ||||| Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631 ||||| || ||| | ||| | ||||| || || | || ||| || | |||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691 | ||||| ||||| |||||||||||||| || || ||||||||||| || || || || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCA 155751 | |||||||| ||||| ||||||||||| | | | || |||||||| ||||| Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 155752 TGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTT 155811 |||||||| || | || ||| |||||| | ||| | || ||||| |||||||| Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 155812 AACGGTTTCAACTTCAACCAGTCTGTAGTAGA 155843 || |||||||| |||||||| |||||||| || Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGA 2030422 >seq404 Length=1096556 Score = 432 bits (478), Expect = 4e-116 Identities = 487/651 (75%), Gaps = 6/651 (1%) Strand=Plus/Minus Query 155309 AGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 155368 ||||||||||| || |||| | || ||||| |||||||| | ||||||| || |||| Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358 Query 155369 CAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTG 155428 | || | |||| ||||| ||| | ||||||| | ||||| || || |||| Sbjct 544357 CTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTG 544298 Query 155429 ATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAAC 155488 ||| |||||||| || |||||||||||||| |||| |||| | || ||||| || || | Sbjct 544297 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 544238 Query 155489 ACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTC 155548 |||| |||||||||||||| || |||||| | || ||||| ||||| ||||| || || | Sbjct 544237 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 544178 Query 155549 TTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGC 155608 | ||| ||||||||| ||||| ||||| || ||| | ||| | ||||| || || Sbjct 544177 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 544118 Query 155609 AAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTG 155668 | || ||| || | ||||||| ||||| ||||| |||||||||||||| || || | Sbjct 544117 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 544058 Query 155669 CTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAA 155728 |||||||||| || || || || | |||||||| ||||| ||||||||||| | Sbjct 544057 CTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 543998 Query 155729 GTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTG 155788 | | || |||||||| ||||| ||||||| || | || ||| |||||| | ||| Sbjct 543997 CTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGTA 543938 Query 155789 TGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTA 155848 | || ||||| |||||||| || |||||||| |||||||| |||||||| || || Sbjct 543937 TTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TA 543881 Query 155849 GT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGG 155905 || ||| || || ||| ||||| || ||| ||||||| ||| |||||||||| Sbjct 543880 GTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGG 543821 Query 155906 AAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 |||| ||||| || ||||| ||||| ||||||||||| ||||| ||||||| Sbjct 543820 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 543770 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||||||| | | | || || | || ||| || Sbjct 545931 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 545872 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || ||||||||||| ||||| ||||| |||||||||||||||||||| || |||| ||| Sbjct 545871 GCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 545812 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGC 155162 || | ||||| ||||| || || |||||||| Sbjct 545811 CTACTTTATGGAAACAATATTATTTCTGGTGC 545780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584780722601120