Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq345 432 1e-116 seq43 383 5e-102 seq404 340 5e-89 >seq345 Length=1218342 Score = 432 bits (478), Expect = 1e-116 Identities = 641/903 (71%), Gaps = 8/903 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||| Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| || ||||||||| ||| ||| || | ||| | | || Sbjct 657230 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCA 657289 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || ||| |||| ||||| ||| ||||||| ||||| | Sbjct 657290 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAA 657349 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | | | ||| || || | || || |||| | | | ||||| || | ||| Sbjct 657350 GCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAG 657409 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||| | ||||||||| || || | || ||||| ||||| || ||||||||||| Sbjct 657410 TTGTTGGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 657469 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || | || ||||| || | || || | || |||||| |||| ||| Sbjct 657470 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 657529 Query 40884 GTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || |||| || | | |||| || ||||| || ||||||||| || | | Sbjct 657530 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAG 657586 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || ||||| | ||| || ||||||||||| || |||||||| || Sbjct 657587 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 657646 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| Sbjct 657647 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 657706 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || |||||||| | |||||||| ||||| ||||| ||| |||| | |||||| Sbjct 657707 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 657766 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | ||||| ||| ||||| || | |||||| | | | | ||||||||||| | | Sbjct 657767 GAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGA 657826 Query 41181 CCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCG 41240 || ||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| Sbjct 657827 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 657886 Query 41241 TTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 ||||||| ||| || || | | |||| |||||||| |||||||| ||||| | || || Sbjct 657887 TTGTATAACCATTCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAATGCAAACCTAT 657945 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 || |||| | |||| | || ||||| ||||||||||| || || | || || | Sbjct 657946 AGCTGTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCT 658005 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 ||||| || ||||| || ||||| |||||||| || || || || || || | ||| || Sbjct 658006 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAAGAGATAAT 658065 Query 41420 GAA 41422 || Sbjct 658066 AAA 658068 >seq43 Length=3080068 Score = 383 bits (424), Expect = 5e-102 Identities = 555/778 (71%), Gaps = 8/778 (1%) Strand=Plus/Plus Query 40619 AGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTT 40678 |||| || | ||| | || | || ||||| || ||||| || || |||||||| ||||| Sbjct 2030400 AGGACTGCCATTATCCTTGACATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTT 2030459 Query 40679 AAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACC 40738 ||||||||||| ||||| | | || | ||| || || | || || ||||| | Sbjct 2030460 GAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGC 2030519 Query 40739 AAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACC 40798 || ||||| |||| | ||| |||||||| ||||||||| || || | || || Sbjct 2030520 TAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCC 2030579 Query 40799 AAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCC 40858 ||| ||||| || ||||||||||| |||||||| || | || ||||| || | || || Sbjct 2030580 AAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACC 2030639 Query 40859 GTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCT 40915 | || |||||| |||| ||||| |||| || | | |||| || ||||| Sbjct 2030640 TTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA 2030697 Query 40916 TCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAA 40975 || ||||||||| || | | || || || || || || ||||| | ||| || || Sbjct 2030698 -CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAA 2030756 Query 40976 TGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACT 41035 ||||||||| || |||||||| || || ||||| |||| ||| |||||||| || ||| Sbjct 2030757 TGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGA 2030816 Query 41036 GATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATAC 41095 |||||||| ||||||||||||||| || |||||||| | |||||||| ||||| || Sbjct 2030817 GATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGACCAATTGGATAAATCAAGAAAAC 2030876 Query 41096 AGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 ||| ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 2030877 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 2030936 Query 41156 TCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAA 41215 | | | ||||||||||| | ||| ||| ||||| || | ||| ||||| || Sbjct 2030937 ACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAA 2030996 Query 41216 GACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCC 41274 ||||| || | ||| || | ||| || |||| ||| || || | | |||| ||||||| Sbjct 2030997 AACAATTAGCTCATAAGGACTGCCATTATATAACCATTCATCAACGGATGCC-GCTTCCC 2031055 Query 41275 AGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAA 41334 | |||||||| ||||| | || || || ||| | |||| | || ||||| |||| Sbjct 2031056 ATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAA 2031115 Query 41335 TATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTAC 41392 ||||||| || || | || || || ||||| || ||||| || ||||| |||||||| Sbjct 2031116 TATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 340 bits (376), Expect = 5e-89 Identities = 519/734 (71%), Gaps = 8/734 (1%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 543770 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 543829 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 543830 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 543889 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| ||||| ||||||||||| ||||| | | | Sbjct 543890 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAG 543949 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | ||||| || || | | || ||||| | || ||||| |||| | ||| |||| Sbjct 543950 TGAGCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 544009 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || || | || ||||| ||||| || ||||||||||| |||| Sbjct 544010 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 544069 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || | || ||||| || | || || | || |||||| |||| ||||| | Sbjct 544070 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 544129 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||||| || ||||||||| || | | || | Sbjct 544130 CCCTGATCAAACTAGAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAGCCGC 544186 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || ||||| | ||| || ||||||||||| || |||||||| || || | Sbjct 544187 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 544246 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 544247 GGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGC 544306 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 |||||||| | |||||||| ||||| ||||| ||| | || | || |||| | Sbjct 544307 TTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAAT 544366 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| | | ||||| || | |||||| | | | | ||||||||||| | || Sbjct 544367 ATGCAATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT-TATATATA 544425 Query 41185 CGTATGCTGCTA-CTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 ||| || | || | ||| ||||| | ||||| || | ||| || ||||| ||| Sbjct 544426 TATATATATATATCACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTG 544485 Query 41244 TATAGCCACTCGTC 41257 |||| ||| || || Sbjct 544486 TATAACCATTCATC 544499 Score = 91.5 bits (100), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 41322 GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCA 41381 || ||||| ||||||||||| || || | || || || ||||| || ||||| || ||| Sbjct 545780 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 545839 Query 41382 TCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAG 41440 || |||||||| || || || || || || ||||| || || ||| | || || || | Sbjct 545840 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAA 545898 Query 41441 TAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 ||| | || ||||| | ||||||||||| || | ||| Sbjct 545899 TAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTA 545937 Score = 84.2 bits (92), Expect = 6e-12 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| |||||||| || || || || || || ||||| || || ||| | | Sbjct 545938 ACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 545996 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 | || || | ||| | || ||||| | ||||||||||| || | ||| || ||||| | Sbjct 545997 TTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 546056 Query 41491 CGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| || | ||||||||| || Sbjct 546057 CAGTGCTGGTTATCCAGTTACAGAA 546081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143689683415368