Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq345 527 7e-145 seq43 464 7e-126 seq404 417 9e-112 seq51 82.4 9e-11 >seq345 Length=1218342 Score = 527 bits (584), Expect = 7e-145 Identities = 649/887 (73%), Gaps = 0/887 (0%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCA 67472 ||||| || | ||||| || || ||||| ||| ||| || | ||| ||| Sbjct 657230 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCA 657289 Query 67473 ACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATT 67532 || || ||||||||||| |||||| | || |||||||| ||||||| | ||| | Sbjct 657290 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAA 657349 Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 ||| ||||||| || | || ||||| || | ||| | |||||| || | | | ||| Sbjct 657350 GCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAG 657409 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 |||||| || ||||| ||||||||||| || || || || ||||||||||| || || Sbjct 657410 TTGTTGGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 657469 Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 || ||||| ||||| ||||| ||||| ||||||| | || || || | || || Sbjct 657470 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 657529 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| ||||| | | ||| || || | ||||| ||||||||||| || || || || Sbjct 657530 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 657589 Query 67773 CCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCT 67832 ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || Sbjct 657590 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 657649 Query 67833 TGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 ||||| || | ||| |||| ||||||||||| || || |||||||| | ||||| || Sbjct 657650 TGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAG 657709 Query 67893 GAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAG 67952 || ||||| | ||||| | |||||| ||||| || || | || ||||| || Sbjct 657710 CTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 657769 Query 67953 TATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCA 68012 ||||| ||| |||||||| |||||||| | |||| || ||||||||||| |||||| Sbjct 657770 TATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCC 657829 Query 68013 CAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTA 68072 ||| | | || | | |||||| | || | || | |||| || ||||| Sbjct 657830 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 657889 Query 68073 TACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCG 68132 || ||||| ||||| | | ||| |||||||| || || || || || | ||| || || Sbjct 657890 TATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCT 657949 Query 68133 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCA 68192 | ||| |||||| || ||||||||||| || ||||| || || | || || | | | Sbjct 657950 GTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTAGAA 658009 Query 68193 ACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAA 68239 |||||||| | |||||||| ||||| |||||||| || |||||||| Sbjct 658010 ACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAA 658056 >seq43 Length=3080068 Score = 464 bits (514), Expect = 7e-126 Identities = 554/752 (74%), Gaps = 0/752 (0%) Strand=Plus/Plus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | ||| Sbjct 2030422 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCT 2030481 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | ||||||||||| || | || ||||| | ||||| |||||||| || | | | Sbjct 2030482 AAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGA 2030541 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| ||||||||||| || || || || ||||||||||| || Sbjct 2030542 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 2030601 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | || || || | || Sbjct 2030602 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 2030661 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | ||| || || | ||||| ||||||||||| || || || Sbjct 2030662 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 2030721 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| Sbjct 2030722 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 2030781 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 2030782 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 2030841 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || || ||||| | ||||| | |||||| ||||| || || | || ||||| Sbjct 2030842 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 2030901 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| |||||||| |||||||| |||||| || ||||||||||| |||| Sbjct 2030902 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 2030961 Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 || ||| | | || | | |||||| || || | || | |||| | ||| Sbjct 2030962 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACTGCCA 2031021 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 ||||| ||||| ||||| | | ||| |||||||| || || || || || | ||| || Sbjct 2031022 TTATATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATA 2031081 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 || ||| |||||| || ||||||||||| || ||||| || || | || || || Sbjct 2031082 GCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCA 2031141 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAAC 68221 | ||||||||| | |||||||| ||||| || Sbjct 2031142 GAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 417 bits (462), Expect = 9e-112 Identities = 484/651 (74%), Gaps = 6/651 (1%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||| Sbjct 543770 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 543829 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | ||||| || || ||||| ||| ||| || || |||| |||| Sbjct 543830 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAA 543886 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | || ||||||||||| |||||||| || |||||||| |||||||| | ||| | | Sbjct 543887 CTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAG 543946 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 |||||| ||| || | || |||| | ||||| |||||||| || | | | |||| Sbjct 543947 CAGTGAGCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGT 544006 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||||||| ||||| ||||||||||| || || || || ||||||||||| || || | Sbjct 544007 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATAT 544066 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | ||||| ||||| ||||| ||||| ||||||| | || || || | || || | Sbjct 544067 TATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGG 544126 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | ||| || || | ||||| ||||||||||| || || || || | Sbjct 544127 TTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGC 544186 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || | Sbjct 544187 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 544246 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | ||| |||| ||||||||||| || || |||||||| | ||||| || Sbjct 544247 GGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGC 544306 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 || ||||| | ||||| | |||||| ||||| || | | || || || || | Sbjct 544307 TTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAAT 544366 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACT 68004 |||| | | |||||||| |||||||| | |||| || ||||||||||| Sbjct 544367 ATGCAATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT 544417 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 68151 GCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCA 68210 ||||||||||| || ||||| || || | || || || | ||||||||| | |||||| Sbjct 545780 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 545839 Query 68211 TCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGC 68270 || ||||| || ||||| || |||||||| || || || || || | ||| | | Sbjct 545840 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 545899 Query 68271 AAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || ||| |||||||| ||||| ||||| |||| Sbjct 545900 AAAGTAGGGATCATCAAAACACCAAACCATCCAA 545933 >seq51 Length=2912257 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 ||||| | ||||||||| | | | || || ||||||||||| ||| | || ||| | ||| Sbjct 983244 GCATATTAGAAGATCAATCTATCAAAATAACCATGAGCAGCTACATTATTATAAATTTCT 983303 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 | ||||| |||| ||||||| | || || || | | | ||||||||||| Sbjct 983304 TTCTCTTGATCGAATTTGTAACATTCATTAGTAGATTCATTTTTTATGGTTTCTCTGATC 983363 Query 67725 AGAGAAGAAGTAAC-AAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATAC 67780 | | |||||| || |||| |||| ||||||||||| || | || || | | |||| Sbjct 983364 AAATTAGAAGTTACTAAGA-AACCATGCATAGCACTGAATAAGGAGCCGCTGGATAC 983419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566894388868320