Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1752 123 4e-23 seq61 104 3e-17 seq6 98.7 1e-15 seq403 95.1 2e-14 seq166 95.1 2e-14 seq629 89.7 8e-13 seq765 84.2 3e-11 seq687 84.2 3e-11 >seq1752 Length=70440 Score = 123 bits (136), Expect = 4e-23 Identities = 247/366 (67%), Gaps = 11/366 (3%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 |||| |||||||| || ||| ||| || || ||||||| || || || ||||| Sbjct 24523 TATAGCAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAG 24582 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAA-CTACT 18267 || ||||| || ||||| | || | || |||||||||||||||| || ||| || | Sbjct 24583 AATGTTAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCG-CGCAAAAGCTTCC 24641 Query 18268 AGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---A 18324 |||||| ||||| ||||| || || || || || || | || || |||||| | | | Sbjct 24642 AGAAAAAAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAGTCTCCGA 24701 Query 18325 TTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACT 18384 || | ||||| | | ||||| || ||| | ||| || | | | Sbjct 24702 ACCATCG------ATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGT 24755 Query 18385 CTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAA 18444 ||| || |||| |||||| || || || ||||||||||| |||||||| || | || Sbjct 24756 CTCAATTGCATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAA 24815 Query 18445 CAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCT 18504 | | ||||| || ||||| || |||| ||||| || || || | ||| || | | Sbjct 24816 AAGACTGTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACG 24875 Query 18505 AGCCTC 18510 |||||| Sbjct 24876 AGCCTC 24881 >seq61 Length=2804743 Score = 104 bits (114), Expect = 3e-17 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | |||||| | ||||| ||||| || || || ||||| || ||| Sbjct 1592885 ATGCAAATATTTGTGAAAACACTCACTGGGAAAACCATCACGTTGGAAGTAGAGAGTTCG 1592944 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||||| ||||| ||||| || || || ||||| || Sbjct 1592945 GACACCATAGACAATGTGAAGGCAAAAATTCAAGACAAAGAGGGAATCCCGCCAGATCAG 1593004 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| ||||| ||| | |||||| | | || || | ||||||| Sbjct 1593005 CAGAGATTAATCTTTGCTGGTAAACAGATTGAAGATGGCCGTACGTTGGCTGATTATA-- 1593062 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 1593063 ATATCCAAA 1593071 >seq6 Length=4471405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| || || ||||| || || || || ||| Sbjct 4400490 ATGCAAATCTTTGTGAAAACCCTTACTGGGAAGACCATTACCTTGGAGGTAGAGAGTTCG 4400431 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| |||||| ||||| || ||||| || || ||||| || Sbjct 4400430 GACACCATTGACAATGTGAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAG 4400371 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || ||||||||||| ||| || || | | ||||| ||| Sbjct 4400370 CAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCTGATTACAAT 4400311 Query 156003 AT 156004 || Sbjct 4400310 AT 4400309 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| || || |||||||| ||||| ||| || Sbjct 4401402 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACATTGGAAGTGGAAAGCTCA 4401343 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || || || || || || || || ||||| ||||| || Sbjct 4401342 GATACTATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATACCACCAGACCAG 4401283 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||||||||| || ||| Sbjct 4401282 CAGAGGTTGATCTTTGCAGGTAAGCAGCTTGAGGAT 4401247 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| || || |||||||| ||||| ||| || Sbjct 4401630 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATTACATTGGAAGTTGAAAGCTCC 4401571 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || || || || || || || || || ||||| || Sbjct 4401570 GATACTATTGAAAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAG 4401511 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||||||||| || ||| Sbjct 4401510 CAGAGGTTGATCTTTGCGGGTAAGCAGCTTGAGGAT 4401475 >seq403 Length=1096870 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | |||||| | ||||| ||| | || || || ||||| || ||| Sbjct 1091627 ATGCAAATATTTGTGAAAACACTCACTGGGAAAGCCATCACGTTGGAAGTAGAGAGTTCG 1091568 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| ||||| ||||| ||||| || || |||| || Sbjct 1091567 GATACCATAGACAATGTGAAGGCAAAAATTCAAGACAAAGAGGGGATCTTGTCAGATCAG 1091508 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| ||||| ||||| |||||| | | || || | ||||||| Sbjct 1091507 CAGAGATTAATCTTTGCTGGTAAACAGCTTGAAGATGGCCGTACGTTGGCTGATTATA-- 1091450 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 1091449 ATATCCAAA 1091441 >seq166 Length=1910501 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||||||||| || || || || || || || Sbjct 30152 ATGCAGATTTTTGTCAAGACCCTAACTGGAAAAACCATAACCTTGGAGGTTGAGAGCTCA 30211 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||| || ||||| || || ||||| |||||||| || Sbjct 30212 GATACTATTGACAATGTCAAGGCTAAGATCCAAGAGAAGGAGGGCATTCCTCCAGACCAG 30271 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || ||||| || || ||| ||||| || | ||||| ||| Sbjct 30272 CAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGATGGGAGAACATTGGCTGATTACAAT 30331 Query 156003 AT 156004 || Sbjct 30332 AT 30333 >seq629 Length=730630 Score = 89.7 bits (98), Expect = 8e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 |||||||| || |||| || |||||||| ||||||||||| || || || || || | Sbjct 102203 ATGCAAATTTTCGTTAAGACGTTGACTGGGAAAACTATTACCTTGGAGGTGGAGAGCAGC 102262 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || ||||| || || || || || || || ||||| || Sbjct 102263 -GACACCATTGATAACGTCAAGGCAAAAATTCAGGACAAGGAGGGAATCCCACCAGACCA 102321 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||||| |||||||| |||||| | | ||||| | ||||| || Sbjct 102322 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 102381 Query 156002 TAT 156004 ||| Sbjct 102382 TAT 102384 >seq765 Length=559349 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| || ||| | ||||| ||||| ||||| |||||||| | || ||||| || | Sbjct 186513 ATGCAGATCTTTGTCAAAACCTTGACCGGAAAGACTATTACTCTGGAGGTCGAGAGCAGC 186572 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || ||| || || ||||| ||||| || || ||||| || Sbjct 186573 -GACACCATTGATAACGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCCCCAGACCA 186631 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | || | ||| || || |||||||| || | ||||| | |||||||| Sbjct 186632 GCAAAGGCTCATCTTTGCTGGAAAACAGCTCGAGGACGGTCGCACTTTGGCCGATTATAA 186691 Query 156002 TAT 156004 ||| Sbjct 186692 TAT 186694 >seq687 Length=650195 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | || || || || || || || || || ||| |||| Sbjct 287005 ATGCAGATATTTGTGAAGACTCTTACAGGGAAGACAATCACCTTGGAGGTTGAAAGTTCT 287064 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || || || || || || ||||| || |||||||| || Sbjct 287065 GATACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCAGACCAG 287124 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||||||||| || ||| Sbjct 287125 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAGGAT 287160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731803826123200