Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq166 84.2 2e-11 seq68 84.2 2e-11 seq571 82.4 6e-11 >seq166 Length=1910501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || |||| || |||||||| ||| | || ||| ||| Sbjct 30152 ATGCAGATTTTTGTCAAGACCCTAACTGGAAAAACCATAACCTTGGAGGTTGAGAGCT-C 30210 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || ||||| || || || ||| | || || || Sbjct 30211 AGATACTATTGACAATGTCAAGGCTAAGATCCAAGAGAAGGAGGGCATTCCTCCAGACCA 30270 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || || || ||||| | | |||| |||| || ||||| Sbjct 30271 GCAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGATGGGAGAACATTGGCTGATTACAA 30330 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||| ||||| | ||| |||| Sbjct 30331 TATTCAGAAGGAATCTACCCTTCACTTGGT 30360 >seq68 Length=2695109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || |||||||| || || || |||||| | ||| ||| ||| Sbjct 1665975 ATGCAGATCTTTGTGAAGACTTTAACTGGGAAGACAATTACCTTGGAAGTTGAGAGCTCA 1665916 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| || || || || || ||| | ||| || || Sbjct 1665915 -GACACAATCGACAATGTTAAAGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 1665857 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||| ||||| | ||| | || |||||||| Sbjct 1665856 GCAGAGGCTGATCTTTGCAGGCAAACAGCTTGAGGATGGTCGCACACTTGCTGACTACAA 1665797 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 1665796 CATTCAGAAGGAGTCCAC 1665779 >seq571 Length=794773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27669 TAAAATAACCCTGCTCTCCCCAGTCCGCGCCCCATGTGTTCTTTAATATCCAAAAGGGTA 27728 ||||||| || | ||||||||||| | ||||||| |||||| | || |||| | || | Sbjct 1244 TAAAATAGCCATTATCTCCCCAGTCATCTCCCCATGAGTTCTTAATTAGCCAATATGGAA 1303 Query 27729 CGGCGTTTTCGACGCCGTACCCTACTAGCAGCACTGCGTGGTTCA 27773 | | |||||||| || ||||| ||| ||| ||||| ||||||| Sbjct 1304 CACCATTTTCGACTCCATACCCAACTGCCAGAACTGCATGGTTCA 1348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398840573510428