Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1752 129 1e-24 seq526 113 1e-19 seq1037 98.7 2e-15 seq178 96.9 8e-15 seq866 91.5 3e-13 seq114 91.5 3e-13 >seq1752 Length=70440 Score = 129 bits (142), Expect = 1e-24 Identities = 351/534 (66%), Gaps = 5/534 (1%) Strand=Plus/Minus Query 131462 GATATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAA 131521 || |||||||||||| | | || |||| ||||||| ||| ||| ||||| | | || Sbjct 25076 GAAATGTATAAGAAAGCCGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCTCAA 25017 Query 131522 GATATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTT 131581 ||| | | |||||| |||| ||||||| | ||||| || | |||||| Sbjct 25016 GATCTCCGCCACTGGGAAGCCCTAACACCCGATGAAAAGCACTTTGTCACCCATGTTCTT 24957 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 |||||||| |||| ||||| || ||| | ||||| || | | ||| || | Sbjct 24956 GCATTCTTTGCCGCCTCCGATGGTATCGTTCTCGAAAACCTCGCTGGACGTTTTATGAAG 24897 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| | | || |||| | | ||||| ||| ||| |||| ||||| ||| Sbjct 24896 GAAGTCCAGGTTGCTGAGGCTCGTGCTTTCTATGGATTCCAAATCGCTATTGAAAATATC 24837 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAAT 131761 ||| ||||||||| | ||| | |||| | | ||||| || | || || ||| Sbjct 24836 CATTCCGAGATGTACAGTCTTTTGTTGGAGACTTATATTAAAGATTCCAACGAGAAGAAT 24777 Query 131762 AAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATT 131821 || ||| |||| | | | | ||| | || ||||| || ||||| | Sbjct 24776 CGCTTGTTTCATGCAATTGAGACTGTCCCTTGTGTGGCTAAAAAAGCTGAGTGGGCCCTC 24717 Query 131822 AAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTT 131881 | ||||| |||| ||| | | |||| | || || | |||||||| ||||| Sbjct 24716 AGGTGGATC---GATGGTTCGGAGACTTTTGCGGAGAGGCTGATCGCTTTTGCCTGTGTG 24660 Query 131882 GAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATT 131940 || || ||||| ||||| || ||||| || || || |||||||| ||||||||||| || Sbjct 24659 GAGGGAATATTTTTTTCTGGAAGCTTT-TGCGCGATATTTTGGCTAAAGAAGCGTGGCTT 24601 Query 131941 GATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCA 131994 |||||| ||| | |||| || || | || |||||| ||||||| | ||||| Sbjct 24600 GATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGATGAGGGCTTGCA 24547 >seq526 Length=881737 Score = 113 bits (124), Expect = 1e-19 Identities = 139/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | || || |||||| | ||||| || ||||||||| Sbjct 209247 AGGCATTTGAATGATGGTGACTTTGTGCTTTTCAATCGACAACCCAGTCTCCATAAAATG 209188 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGG-ATTGACATTTC-GATTAAATGTAA 305423 || || |||| |||||| | |||| ||||| | ||| | |||| | ||||| | Sbjct 209187 TCAATTATGGGACATAAAAT-AAAG-ATTATGCGATATTCAACTTTCTGTTTAAAGTTGT 209130 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 209129 CTGTTACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTC 209070 Query 305484 AATCA 305488 ||||| Sbjct 209069 AATCA 209065 >seq1037 Length=311975 Score = 98.7 bits (108), Expect = 2e-15 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | || || |||||| | ||||| || || |||||| Sbjct 173462 AGGCATTTGAATGATGGTGACTTTGTGCTCTTCAATCGACAACCCAGTCTCCACAAAATG 173403 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAATGTAA 305423 || || |||| |||||| | |||| ||||| | ||| | |||| | || || | Sbjct 173402 TCAATTATGGGACATAAAAT-AAAG-ATTATGCCATATTCAACTTTCCGTTTGAACTTGT 173345 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||| |||||||| |||| Sbjct 173344 CTGTTACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTC 173285 Query 305484 AATCA 305488 ||||| Sbjct 173284 AATCA 173280 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 304931 ATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAA 304990 || |||||||| | ||||||||||| |||||| | || |||| | | | ||| Sbjct 174001 ATCATGCAGGCTACACAAAGATCTGGGAGACCTATTAAATCTATTTGTAGTAGGCTGAAA 173942 Query 304991 GGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGA 305050 | || || || || ||| | ||||| || ||||| |||||||| |||||| |||| | Sbjct 173941 GCCAAGGAAGGCCGGATTAGGGGTAACCTGATGGGGAAACGTGTGGATTTTTCTGCACGT 173882 Query 305051 AGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--A 305108 | || || ||||||||| | |||| | || ||||| |||| || || ||| | | Sbjct 173881 ACAGTCATTACACCTGATCCCACTATTAATATTGATGAACTAGGTGTGCC--TTGGAGTA 173824 Query 305109 TTGCTTTAAAACTAACATTTCCAGA 305133 |||| || || || || | |||||| Sbjct 173823 TTGCATTGAATCTCACCTATCCAGA 173799 >seq178 Length=1827475 Score = 96.9 bits (106), Expect = 8e-15 Identities = 173/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 279844 TGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGAT 279903 |||||| || | |||||||| | | || |||||| |||| || | || | ||||| Sbjct 538074 TGATGTCCAAAGATCTATTCCATCTATGATTGATGGTCTGAAGCCAGCTCAAAGGAAGAT 538015 Query 279904 TATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGG 279963 | |||||||||||||| || || ||||| || || || ||| | ||||| ||| Sbjct 538014 CCTTTTCAGTTGTTTCAAGAGGAATTTGGTCAAAGACATAAAAGTTTCCCAGTTTCAAGG 537955 Query 279964 TTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGT 280023 |||||| || || | || | ||| || || ||||| |||| | ||| | || | Sbjct 537954 TTATGTATCCGAGAAGGCTGCTTACCACCATGGTGATCAAAGTCTTAATGGTACAATCAT 537895 Query 280024 AGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCA 280083 || | || || ||||||| | || ||| | ||||| ||| ||||||| || || Sbjct 537894 TGGCATGGCACAGAATTTTATTGGCAGTAATAACATCAATCTTCTTGCACCAAAAGGACA 537835 Query 280084 ATTTGGTTCTCGT 280096 |||||| ||||| Sbjct 537834 ATTTGGCACTCGT 537822 >seq866 Length=447837 Score = 91.5 bits (100), Expect = 3e-13 Identities = 172/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 279844 TGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGAT 279903 ||||||||| | |||||||| | || ||||| |||| || | ||| | ||||| Sbjct 351468 TGATGTTCAAAGATCTATTCCCTCCATGATTGATGGCCTGAAGCCAGCTCAGAGGAAGAT 351409 Query 279904 TATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGG 279963 | |||||||||||||| ||||| ||||| || || ||| ||| | ||||| ||| Sbjct 351408 CCTTTTCAGTTGTTTCAAGAGAAATTTGGTTAAAGACATTAAAGTTTCCCAGTTTCAAGG 351349 Query 279964 TTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGT 280023 |||||| || || | | | ||| || || ||||| |||| | | | | || | Sbjct 351348 TTATGTATCTGAGAAGTCTGCTTACCACCATGGTGATCAAAGTCTTAATGCTACAATCAT 351289 Query 280024 AGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCA 280083 || | || || ||||||| | || ||| | || || ||| ||||||| || || Sbjct 351288 TGGAATGGCACAGAATTTTATTGGCAGTAATAACATCAACCTTCTTGCACCAAAAGGACA 351229 Query 280084 ATTTGGTTCTCGT 280096 |||||| ||||| Sbjct 351228 ATTTGGCACTCGT 351216 >seq114 Length=2223408 Score = 91.5 bits (100), Expect = 3e-13 Identities = 172/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 279844 TGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGAT 279903 |||||| || | |||||||| | | || |||||| |||| || | || | ||||| Sbjct 1040885 TGATGTCCAAAGATCTATTCCATCTATGATTGATGGTCTGAAGCCAGCTCAAAGGAAGAT 1040826 Query 279904 TATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGG 279963 | |||||||||||||| || || ||||| || || || ||| | ||||| ||| Sbjct 1040825 CCTTTTCAGTTGTTTCAAGAGGAATTTGGTCAAAGACATAAAAGTTTCCCAGTTTCAAGG 1040766 Query 279964 TTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGT 280023 |||||| || || | || | ||| || || ||||| |||| | ||| | || | Sbjct 1040765 TTATGTATCCGAGAAGGCTGCTTACCACCATGGTGATCAAAGTCTTAATGGTACAATCAT 1040706 Query 280024 AGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCA 280083 || | || || ||||||| | || ||| | || || ||| ||||||| || || Sbjct 1040705 TGGCATGGCACAGAATTTTATTGGCAGTAATAACATCAACCTTCTTGCACCAAAAGGGCA 1040646 Query 280084 ATTTGGTTCTCGT 280096 |||||| ||||| Sbjct 1040645 ATTTGGCACTCGT 1040633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186699484597372