Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq887 100 2e-16 seq214 100 2e-16 seq574 96.9 2e-15 seq955 95.1 8e-15 seq166 95.1 8e-15 seq68 95.1 8e-15 seq558 91.5 1e-13 seq56 89.7 3e-13 >seq887 Length=435773 Score = 100 bits (110), Expect = 2e-16 Identities = 171/243 (70%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||||||| | |||||| || |||||| || || || ||| Sbjct 324270 AAAATCTGCATGCCACCCCTCAAACGAAGCACCAAGTGAAGAGTGGATTCCTTCTGGATG 324329 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||| ||||| || | || || | ||| ||||| ||||| || | | |||| Sbjct 324330 TTGTAATCGGCCAGTGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGC 324389 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||||| || || ||| || |||| || | ||| | ||||| Sbjct 324390 TGGTCAGGTGGGATCCCTTCCTTATCCTGAATCTTGGCTTTC-ACGTTGTCAATAGTGTC 324448 Query 33690 GCTTGA---TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| |||||| || | ||||| || || || || | ||||| ||||| ||||| Sbjct 324449 ---TGAACTTTCCACCTCTAGAGTGATAGTCTTCCCAGTAAGGGTTTTCACAAAAATCTG 324505 Query 33747 CAT 33749 ||| Sbjct 324506 CAT 324508 >seq214 Length=1602240 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || | ||||| || ||||| ||| || || ||||||||||||| Sbjct 1070188 CCACCCCTCAAGCGCAGCACCAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGCA 1070129 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| ||||||||| || || || | |||||||| || | || Sbjct 1070128 AGGGTCCGTCCATCTTCCAGTTGTTTTCCAGCGAAGATTAGGCGCTGCTGGTCCGGTGGG 1070069 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| ||| | ||||| || || || Sbjct 1070068 ATTCCCTCCTTGTCTTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCCGAGGACTCTAC 1070010 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || | || || || ||||| |||| ||||| || ||||||||||| |||| Sbjct 1070009 CTCGAGTGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTTGG 1069956 >seq574 Length=792550 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || |||||| ||| ||||| |||||||| || | ||| ||||| | Sbjct 430510 ACGAAGCACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTGCGGCC 430451 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || || || || || |||| ||||||||||| | || | || || || Sbjct 430450 GTCCTCAAGCTGCTTCCCAGCGAAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTT 430391 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| ||| | ||| || ||| || || || | || | Sbjct 430390 GTCCTGGATCTT-GGCCTTGACATTGTCGATGGTATCTGATGACTCAACCTCTAGTGTTA 430332 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| || || ||||| ||||| || ||||||||||| |||| Sbjct 430331 TCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCATGGTTG 430290 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || |||||| ||| ||||| |||||||| || | ||| ||||| | Sbjct 450389 ACGAAGCACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTGCGGCC 450330 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || || || || || |||| ||||||||||| | || | || || || Sbjct 450329 GTCCTCAAGCTGCTTCCCAGCGAAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTT 450270 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| ||| | ||| || ||| || || || | || | Sbjct 450269 GTCCTGGATCTT-GGCCTTGACATTGTCGATGGTATCTGATGACTCAACCTCTAGTGTTA 450211 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| || || ||||| ||||| || ||||||||||| |||| Sbjct 450210 TCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCATGGTTG 450169 >seq955 Length=378267 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || | ||||| || ||||| ||| || || ||||||||||||| Sbjct 125671 CCACCCCTCAAGCGCAGCACCAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGCA 125730 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| ||||||||| || || || | |||||||| || | || Sbjct 125731 AGGGTCCGTCCATCTTCCAGTTGTTTTCCAGCGAAGATTAGGCGCTGCTGGTCCGGTGGG 125790 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| ||| | ||||| || || | Sbjct 125791 ATTCCCTCCTTGTCTTGGATCTTGGCCTTC-ACATTGTCGATAGTGTCCGAGGACTCAAA 125849 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || | || || || ||||| |||| ||||| || ||||||||||| |||| Sbjct 125850 CTCGAGTGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTTGG 125903 >seq166 Length=1910501 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | ||||| || || ||| || ||||| ||||||||||| | Sbjct 29466 CCACCCCTCAAACGAAGCACCAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCAGCA 29407 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| ||||| ||||| || | | |||||| || | || Sbjct 29406 AGCGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 29347 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||| || || || || |||| |||| ||| | |||| ||| ||| Sbjct 29346 ATCCCTTCCTTATCCTGGATCTTGGCTTTC-ACATTGTCTATAATGTC---TGAACTTTC 29291 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 29290 CACCTCGAGAGTGATGGTTTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 29240 >seq68 Length=2695109 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || ||| ||| || || |||||||| || | Sbjct 1665748 ACCACCCCTGAGACGGAGGACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGC 1665807 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| || ||||| |||| | |||||| ||| | || Sbjct 1665808 AAGTGTGCGACCATCCTCAAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 1665867 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT---T 33697 | || || ||||| ||||| ||| ||||| ||| | ||||| ||| | Sbjct 1665868 GATGCCCTCCTTGTCCTGGATTTTAGCTTT-AACATTGTCGATTGTGTC---TGAGCTCT 1665923 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || || || ||||| || || ||||||||||||||| Sbjct 1665924 CAACTTCCAAGGTAATTGTCTTCCCAGTTAAAGTCTTCACAAAGATCTGCATA 1665976 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | ||||||||| || ||| ||| || || ||||| || || | Sbjct 1665976 ACCACCCCTGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 1666035 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| || ||||| |||| | |||||||||| | || Sbjct 1666036 AAGTGTGCGGCCATCTTCGAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 1666095 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTT-GAT-TCC 33699 | || || ||||| || || ||| | ||| |||| ||| || | | || Sbjct 1666096 GATGCCCTCCTTGTCCTGGATCTTGGCTTTTA-CATTGTCAAT-TGTATCTGAGCTCTCA 1666153 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || ||||| || || || | || || ||||||||||||||| Sbjct 1666154 ACTTCCAAGGTAATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATA 1666204 >seq558 Length=819058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| || |||||| ||| || || |||||||| || | | Sbjct 127111 CCACCACGGAGACGAAGTACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 127052 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||| || ||||| || |||| ||||||||||| | || Sbjct 127051 AGAGTACGGCCATCCTCCAGTTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGG 126992 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | |||||| || || || Sbjct 126991 ATTCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCCGAGGACTCAAC 126933 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || | || ||||| || || |||| ||||| |||||||||||||| ||| Sbjct 126932 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGGTT 126881 >seq56 Length=2885905 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| ||||| | || ||||| ||| || || || ||||| |||| Sbjct 2370397 CCACCCCTCAAACGCAACACTAGGTGGAGAGTCGACTCCTTCTGAATATTGTAGTCGGCA 2370338 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | |||| |||| ||| |||||||| || || | |||||||| || | || Sbjct 2370337 AGGGTCCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG 2370278 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| | ||||| || || || Sbjct 2370277 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTGTCGATAGTGTCCGAGGACTCTAC 2370219 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || | || || || || || |||| ||||| || ||||||||||| ||| || Sbjct 2370218 CTCGAGAGTTATGGTCTTGCCCGTTAGGGTTTTGACGAAGATCTGCATCTTTGATG 2370163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328674146691840