Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq345 508 2e-139 seq43 448 1e-121 seq404 441 2e-119 >seq345 Length=1218342 Score = 508 bits (562), Expect = 2e-139 Identities = 651/892 (73%), Gaps = 4/892 (0%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| | |||||||| || || ||||| || |||||||| || || ||||| || Sbjct 658068 TTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 658009 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 || | || |||||||||||||| || || || || ||| | |||| | | Sbjct 658008 TCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACA 657949 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || || || | || || |||||||| |||||||| || ||||||||||| | ||| Sbjct 657948 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 657889 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837 || || || || | | || | || | |||||| | |||| | | ||||||| Sbjct 657888 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 657829 Query 19838 GGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTAC 19897 || || |||||||||||||| | || | || ||| | ||||||||| |||||| || Sbjct 657828 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 657769 Query 19898 TCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAG 19956 || ||||| |||||||| || |||| || ||||| | | || || |||||||||| || Sbjct 657768 TCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTATCCAATTGGTCAGGGAAG 657710 Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016 ||| || |||| ||||||| | || ||||| ||||| ||||||| ||| | |||||||| Sbjct 657709 CTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 657650 Query 20017 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGG 20076 || || || ||||| || |||||||| || |||||| | || || |||||||||||||| Sbjct 657649 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGG 657590 Query 20077 TGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGA 20135 || || ||||||||||| ||||| ||||| |||| || || | ||| | | || | Sbjct 657589 CGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCTAGTTTGATCAGGGAAA 657531 Query 20136 CTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATA 20195 | || ||| | ||| | || | ||||||| || || ||||| ||||| || |||| Sbjct 657530 CCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATA 657471 Query 20196 ACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACA 20255 | |||||||| ||||||||||| ||||| || |||||||||||||| ||| || ||||| Sbjct 657470 ATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACA 657411 Query 20256 ATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTG 20315 | |||| | | || |||||| | ||| | | ||| || ||||| ||||||||| || Sbjct 657410 ACTCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTG 657351 Query 20316 CCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTC 20375 | || || || || |||| || || || || | |||||| || ||||| || | Sbjct 657350 CTTTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAG 657291 Query 20376 TCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCG 20435 | || | | |||| ||| ||| |||| |||||||| ||| | || |||||||| || | Sbjct 657290 TTGATAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTG 657231 Query 20436 GGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 | | || || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 657230 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 657179 >seq43 Length=3080068 Score = 448 bits (496), Expect = 1e-121 Identities = 552/747 (74%), Gaps = 8/747 (1%) Strand=Plus/Minus Query 19628 GTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATC 19687 || || |||||||| || || ||||| || || || || |||||||||||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 19688 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 19745 || || || ||| | |||| | | || || || || | || || |||||||| | Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTACCCAATAT 2031056 Query 19746 GGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19805 ||||||| || ||||||||||| | || || || | || | | || | || | Sbjct 2031055 GGGAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTT 2030996 Query 19806 TCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGAC 19865 | |||||| | |||| | | ||||||||| || |||||||||||||| | || | Sbjct 2030995 TACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTC 2030936 Query 19866 TAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGG 19925 | || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| | Sbjct 2030935 TGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTG 2030876 Query 19926 TCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATC 19984 | ||||| | | || || |||||||||| ||||| || |||| ||||||| | || ||| Sbjct 2030875 T-TTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 2030817 Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||| ||||||| ||| | |||||||| || || || ||||| || |||||||| Sbjct 2030816 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 2030757 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | || || |||||||||||||| || || ||||||||||| ||||| ||| Sbjct 2030756 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 2030697 Query 20105 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 || |||| || || | ||| | | || || || ||| | ||| | || | || Sbjct 2030696 TC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 2030638 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || || ||||| ||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 2030637 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 2030578 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || |||||||||||||| ||| ||||||||| |||||| |||| |||||||| || Sbjct 2030577 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 2030518 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 ||| ||||| || ||||| ||||||||| |||| || || || || ||||| || || Sbjct 2030517 TGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 2030458 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTC 20370 || || |||||||| || ||||| || Sbjct 2030457 CCTAAATGGTTTCAATTTCAACCAATC 2030431 >seq404 Length=1096556 Score = 441 bits (488), Expect = 2e-119 Identities = 488/645 (76%), Gaps = 4/645 (1%) Strand=Plus/Minus Query 19845 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTC 19904 ||||||||||||| | || | || ||| | ||||||||| | |||| || || || | Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358 Query 19905 CGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCC 19963 | |||||| | || |||| || ||||| | | || || |||||||||| ||||| || Sbjct 544357 CTGTTGCAACTGCTACTGCTGT-TTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCT 544299 Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023 |||| ||||||| | || ||||| ||||| ||||||| ||| | |||||||| || || Sbjct 544298 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 544239 Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCA 20083 || ||||| || |||||||| || |||||| | || || |||||||||||||| || || Sbjct 544238 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 544179 Query 20084 CTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGA 20142 ||||||||||| ||||| ||||| | || || || | | ||| | | || || || || Sbjct 544178 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGA 544120 Query 20143 ACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGT 20202 | | ||| | || | ||||||| || || ||||| ||||| || ||||| ||||| Sbjct 544119 AAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 544060 Query 20203 AGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCG 20262 ||| ||||||||||| ||||| || |||||||||||||| ||| ||||||||| || Sbjct 544059 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCG 544000 Query 20263 TTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 20322 |||| |||| |||||||| ||||| ||||| | ||||| |||||| || |||| || || Sbjct 543999 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGG 543940 Query 20323 CGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAA 20382 || || ||||| || || || || |||||||| || ||||| || | | || | Sbjct 543939 TATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 543880 Query 20383 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGA 20442 | |||||||| ||| |||| |||||||| ||| | || |||||||| || || | || Sbjct 543879 TCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 543820 Query 20443 GGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 543819 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 543775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148815629767416