Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq345 466 5e-127 seq43 399 6e-107 seq404 390 3e-104 >seq345 Length=1218342 Score = 466 bits (516), Expect = 5e-127 Identities = 640/892 (72%), Gaps = 2/892 (0%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| | |||||||| || || ||||| || |||||||| || || |||||||| Sbjct 658068 TTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 658009 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 || || ||| || ||||||||||| || || || || ||| | | || | | Sbjct 658008 TCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACA 657949 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || || || | || || |||||||| |||||||| || ||||||||||| | ||| Sbjct 657948 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 657889 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | |||||| | |||| || | ||||||| Sbjct 657888 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 657829 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || |||||||||||||| | || | || ||| | || |||||| ||| ||||| Sbjct 657828 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 657769 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 |||||||| || ||||| || |||| |||||| | | || ||| | ||||| || Sbjct 657768 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGC 657709 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 ||| || | |||||| | || || || || || ||||||| ||| | || ||||| Sbjct 657708 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 657649 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGT 29205 || || || ||||| || |||||||| || |||||| | ||||| ||||| || ||||| Sbjct 657648 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 657589 Query 29206 GGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGAC 29264 ||||| ||||| ||||| ||||| ||||| | || || || | | ||| | | || || Sbjct 657588 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAAC 657530 Query 29265 GACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAA 29324 || ||| | ||| || | ||||||| || || ||||| ||||| |||||||| Sbjct 657529 CACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAA 657470 Query 29325 CATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAA 29384 |||||||| ||||| ||||| ||||| || |||||||||||||||||| || ||| || Sbjct 657469 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAA 657410 Query 29385 TAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGC 29444 |||| | | || |||||| | ||| | | ||| || ||||| ||||||||| ||| Sbjct 657409 CTCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGC 657350 Query 29445 CTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCT 29504 || || || || |||| || || || || | ||| || || ||||| || | | Sbjct 657349 TTTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGT 657290 Query 29505 CGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGG 29564 || | | |||| ||| |||||||| ||||||||| || | || || |||||||| || Sbjct 657289 TGATAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGG 657230 Query 29565 CTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 | ||||| |||||||| |||||||||||||||||||| || || || ||| Sbjct 657229 TATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 657178 >seq43 Length=3080068 Score = 399 bits (442), Expect = 6e-107 Identities = 539/746 (72%), Gaps = 6/746 (1%) Strand=Plus/Minus Query 28756 GTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATC 28815 || || |||||||| || || |||||||| ||||| ||| || ||||||||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 28816 ATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 28873 || || || ||| | | || | | || || || || | || || |||||||| | Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTACCCAATAT 2031056 Query 28874 GGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 28933 ||||||| || ||||||||||| | || || || | || | | || | || | Sbjct 2031055 GGGAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTT 2030996 Query 28934 TCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGAC 28993 | |||||| | |||| || | ||||||||| || |||||||||||||| | || | Sbjct 2030995 TACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTC 2030936 Query 28994 TAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGG 29053 | || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| | Sbjct 2030935 TGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTG 2030876 Query 29054 TTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTT 29113 ||||| | | || ||| | ||||| || ||| || | |||||| | || || | Sbjct 2030875 TTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCT 2030816 Query 29114 CAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGT 29173 | || || ||||||| ||| | || ||||| || || || ||||| || |||||||| | Sbjct 2030815 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 2030756 Query 29174 TCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTT 29233 | |||||| | ||||| ||||| || ||||| ||||| ||||| ||||| ||||| |||| Sbjct 2030755 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 2030696 Query 29234 CGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGT 29292 | | || || | || | ||| | | || || || ||| | ||| || | ||| Sbjct 2030695 CCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 2030637 Query 29293 TACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGA 29352 |||| || || ||||| ||||| |||||||| |||||||| ||||| ||||| ||||| Sbjct 2030636 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGC 2030577 Query 29353 CGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCT 29412 || |||||||||||||||||| |||||| || |||||| |||| |||||||| ||| Sbjct 2030576 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCT 2030517 Query 29413 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 29472 || ||||| || ||||| ||||||||| |||| || || || || ||||| || || Sbjct 2030516 GCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 2030457 Query 29473 CTGAACGGTTTTAACTTTAACCAGTC 29498 || || ||||| || || ||||| || Sbjct 2030456 CTAAATGGTTTCAATTTCAACCAATC 2030431 >seq404 Length=1096556 Score = 390 bits (432), Expect = 3e-104 Identities = 475/645 (74%), Gaps = 2/645 (0%) Strand=Plus/Minus Query 28973 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTC 29032 ||||||||||||| | || | || ||| | || |||||| | | ||||| ||||| | Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358 Query 29033 CCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCG 29092 | || ||| | || |||| |||||| | | || ||| | ||||| || ||| | Sbjct 544357 CTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTG 544298 Query 29093 ACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAAC 29152 | | |||||| | || || || || || ||||||| ||| | || ||||| || || | Sbjct 544297 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 544238 Query 29153 ATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGC 29212 | ||||| || |||||||| || |||||| | ||||| ||||| || ||||| ||||| | Sbjct 544237 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 544178 Query 29213 TATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAA 29271 |||| ||||| ||||| ||||| | || || || | | ||| | | || || || ||| Sbjct 544177 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAA 544119 Query 29272 GACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTA 29331 | ||| || | ||||||| || || ||||| ||||| |||||||| |||||| Sbjct 544118 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 544059 Query 29332 GCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGT 29391 || ||||| ||||| ||||| || |||||||||||||||||| |||||| || ||| Sbjct 544058 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 543999 Query 29392 TCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGC 29451 ||| |||| |||||||| ||||| ||||| | ||||| |||||| || |||| || || Sbjct 543998 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGT 543939 Query 29452 GTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAAC 29511 || || ||||| || || || || ||||| || || ||||| || | | || | Sbjct 543938 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 543879 Query 29512 AATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAA 29571 | |||||||| |||||||| ||||||||| || | || || |||||||| || | ||| Sbjct 543878 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 543819 Query 29572 GTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || |||||||| |||||||||||||||||||| || || || ||| Sbjct 543818 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 543774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146652621194392