Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq345 517 3e-142 seq43 441 2e-119 seq404 423 5e-114 seq1225 80.6 8e-11 >seq345 Length=1218342 Score = 517 bits (572), Expect = 3e-142 Identities = 647/885 (73%), Gaps = 2/885 (0%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| | ||||||||||| ||||| ||||| |||||||| || || || |||||| Sbjct 658068 TTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 658009 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 | | ||| |||||||||||||| || || || || ||| | |||| | | Sbjct 658008 TCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACA 657949 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 || || || | || || |||||||| |||||||| || ||||||||||| | ||| Sbjct 657948 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 657889 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056 || || || || | | || | || | |||||| | |||| || | ||||||| Sbjct 657888 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 657829 Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116 || || |||||||||||||| | || | || ||||||||||||||| |||||| || Sbjct 657828 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 657769 Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCC 19176 |||||||||||||| || || |||| || ||| | | |||||| ||||||| || | Sbjct 657768 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGC 657709 Query 19177 TTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAG 19236 ||| || | ||||||| | || || |||||| ||||||| ||| ||||||||||| Sbjct 657708 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 657649 Query 19237 GCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGC 19296 ||||| || |||||||| |||||||| || |||||| | || || |||||||| |||||| Sbjct 657648 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 657589 Query 19297 GGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAAC 19355 || || ||||| ||||| ||||| ||||| |||| || || | ||| | | ||||| Sbjct 657588 GGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCTAGTTTGATCAGGGAAAC 657530 Query 19356 TACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAA 19415 || ||| | | |||| || | || |||| || || ||||| ||||| |||||||| Sbjct 657529 CACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAA 657470 Query 19416 CATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAA 19475 || || ||||||||||| |||||||| || | || ||||| || || | |||||| Sbjct 657469 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAA 657410 Query 19476 TAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGC 19535 |||| | | |||||||| || ||| ||| |||||| || || |||||||| || Sbjct 657409 CTCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGC 657350 Query 19536 CCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCT 19595 | || | ||||| |||| |||||| | |||| || || || ||||| || | | Sbjct 657349 TTTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGT 657290 Query 19596 TGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGG 19655 ||| | | |||| ||| ||| |||| |||||||| ||| | || ||||||||||| || Sbjct 657289 TGATAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGG 657230 Query 19656 CTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 | || || ||||| ||||||||||||||||||||||| || || Sbjct 657229 TATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 657185 Score = 89.7 bits (98), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| || || |||||||| | Sbjct 658220 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 658161 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||||| || | | | | || ||| | ||| || ||||| || ||||||||||| | Sbjct 658160 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 658102 Query 18842 CTCCTGTAGACATTGATG 18859 |||| ||||| ||||||| Sbjct 658101 CTCCGGTAGATATTGATG 658084 >seq43 Length=3080068 Score = 441 bits (488), Expect = 2e-119 Identities = 548/746 (73%), Gaps = 6/746 (1%) Strand=Plus/Minus Query 18847 GTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATC 18906 ||||| |||||||| || || || |||||| | || ||| |||||||||||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 18907 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 18964 || || || ||| | |||| | | || || || || | || || |||||||| | Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTACCCAATAT 2031056 Query 18965 GGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19024 ||||||| || ||||||||||| | || || || | || | | || | || | Sbjct 2031055 GGGAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTT 2030996 Query 19025 TCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGAC 19084 | |||||| | |||| || | ||||||||| || |||||||||||||| | || | Sbjct 2030995 TACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTC 2030936 Query 19085 TAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGG 19144 | || ||||||||||||||| |||||| || |||||||||||||| || || |||| | Sbjct 2030935 TGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTG 2030876 Query 19145 TCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTA 19204 | ||| | | |||||| ||||||| || |||| || | ||||||| | || || Sbjct 2030875 TTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCT 2030816 Query 19205 GTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGT 19264 |||||| ||||||| ||| |||||||||||||||| || |||||||| |||||||| | Sbjct 2030815 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 2030756 Query 19265 TCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTT 19324 | |||||| | || || |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 2030755 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 2030696 Query 19325 CGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGC 19383 | |||| || || | ||| | | ||||| || ||| | | |||| || | || Sbjct 2030695 C-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 2030637 Query 19384 TACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGT 19443 |||| || || ||||| ||||| |||||||| || || ||||||||||| |||||||| Sbjct 2030636 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGC 2030577 Query 19444 CGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCT 19503 || | || ||||| || || |||||||| |||||| |||||||||| | ||| Sbjct 2030576 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCT 2030517 Query 19504 GCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAAC 19563 ||||||||||| || || |||||||| | || | || | ||||| ||||| |||||| Sbjct 2030516 GCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 2030457 Query 19564 TTGAATGGCTTTAACTTTAACCAGTC 19589 | ||||| || || || ||||| || Sbjct 2030456 CTAAATGGTTTCAATTTCAACCAATC 2030431 >seq404 Length=1096556 Score = 423 bits (468), Expect = 5e-114 Identities = 478/638 (75%), Gaps = 2/638 (0%) Strand=Plus/Minus Query 19064 AGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123 ||||||||||||| | || | || ||||||||||||||| | |||| || ||||| | Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358 Query 19124 CTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCG 19183 ||||||| | || |||| || ||| | | |||||| ||||||| || |||| | Sbjct 544357 CTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTG 544298 Query 19184 ACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAAC 19243 | | ||||||| | || || |||||| ||||||| ||| |||||||||||||||| | Sbjct 544297 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 544238 Query 19244 ATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCAC 19303 | |||||||| |||||||| || |||||| | || || |||||||| |||||||| || | Sbjct 544237 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 544178 Query 19304 TATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAA 19362 |||| ||||| ||||| ||||| | || || || | | ||| | | ||||| || ||| Sbjct 544177 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAA 544119 Query 19363 GAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTT 19422 | | |||| || | || |||| || || ||||| ||||| |||||||| || || Sbjct 544118 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 544059 Query 19423 GCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGT 19482 ||||||||||| |||||||| || | || ||||| || || |||||||| ||| Sbjct 544058 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 543999 Query 19483 TCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGG 19542 ||| |||||||||| | ||||||||||||| || || |||||| | | || | || Sbjct 543998 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGT 543939 Query 19543 GTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAAC 19602 | ||||| ||||| |||||| | ||||| || || || ||||| || | |||| | Sbjct 543938 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 543879 Query 19603 AATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAG 19662 | |||||||| ||| |||| |||||||| ||| | || ||||||||||| || | || Sbjct 543878 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 543819 Query 19663 GTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || ||||| ||||||||||||||||||||||| || || Sbjct 543818 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 543781 Score = 93.3 bits (102), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| || || |||||||| | Sbjct 546082 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 546023 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||||| || | | | | || ||| | ||| || ||||| || ||||||||||| | Sbjct 546022 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 545964 Query 18842 CTCCTGTAGACATTGATGGCATCCG 18866 |||| ||||| |||||||| || || Sbjct 545963 CTCCGGTAGATATTGATGGTATTCG 545939 Score = 89.7 bits (98), Expect = 1e-13 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 18756 TCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTG 18815 || ||| || || |||||||| ||||||| || | | | | || ||| | || Sbjct 545941 TCGTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT-TCTG 545883 Query 18816 T-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTG 18874 | || ||||| || ||||||||||| ||||| ||||| |||||||| || || || |||| Sbjct 545882 TATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTG 545823 Query 18875 TTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGC 18917 || | || ||| |||||||||||||| || || || || || Sbjct 545822 TTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGC 545780 >seq1225 Length=211548 Score = 80.6 bits (88), Expect = 8e-11 Identities = 110/154 (71%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 19403 AAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACG 19462 |||| |||||||| ||||| ||||| ||| | |||||||| || | || ||| | || | Sbjct 11170 AAGAAACTTATAATATTGTAGCTGCACATAGTTATTTTGGCCGATTGATCTTCTAATATG 11111 Query 19463 CATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCA 19522 | |||||||| | |||| || ||||||| || |||||||||| | | || || | Sbjct 11110 CTAGTTTCAACAACTCTCATTCTTTATATTTCTTCTTAGCTGCTTGGCATATAGTGGGTA 11051 Query 19523 TTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGC 19556 ||| || | || | | | ||||||||||| Sbjct 11050 TTTATTTCACTGCTTTAGTTATTAGCACCATGGC 11017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141136309389816