Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq345 511 6e-140 seq17 486 2e-132 seq43 455 4e-123 seq404 425 7e-114 >seq345 Length=1218342 Score = 511 bits (566), Expect = 6e-140 Identities = 665/914 (73%), Gaps = 4/914 (0%) Strand=Plus/Minus Query 178941 TGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCA 178999 ||||||| ||||| || || | ||||| | || || ||||| || |||||||| || | Sbjct 658081 TGCAACT-TCTGTATTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTA 658023 Query 179000 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 179059 | |||||||| || || | || || | ||||||||||| || || |||||||| || Sbjct 658022 TTCGTGAACCTGTTTCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTA 657963 Query 179060 TCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCG 179119 | || | ||| | || || ||| | || || ||||| || |||||||| ||||| | | Sbjct 657962 TTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTG 657903 Query 179120 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCA 179179 |||| ||| | || || || ||||||| | || | || | |||||| | | || Sbjct 657902 ATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 657843 Query 179180 TCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGA 179239 | | || ||||| ||||||||||||||| || |||| | |||||||| || |||| Sbjct 657842 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGA 657783 Query 179240 TCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTT 179299 | ||||||||| || || || || || ||||| | ||| || ||| | | ||||| Sbjct 657782 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAA 657723 Query 179300 TCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACA 179359 | ||||| || || ||||||| ||||||||| || |||||||||||||| |||| | Sbjct 657722 TTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 657663 Query 179360 TGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG 179419 || |||||||||| || || |||||||||||||||||||| || || ||| | || || | Sbjct 657662 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAG 657603 Query 179420 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGC 179479 |||| |||||||| || || || ||| ||||||||| || | || || || | | Sbjct 657602 CTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGT 657544 Query 179480 TTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAA 179538 ||| || | ||||| || || | || || || | ||||| | ||||| ||||| Sbjct 657543 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAG 657484 Query 179539 GAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATAT 179598 ||||| || ||||| ||||| || || ||||| || || || || ||||||||||||||| Sbjct 657483 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 657424 Query 179599 GCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGC 179658 || | |||||||| || | |||||| |||||| | ||| | | ||| || || || Sbjct 657423 GCTAGTTCCAACAACTCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGT 657364 Query 179659 ATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTC 179718 || ||||||| |||| | || | || |||| |||||||| || | |||||| ||| Sbjct 657363 ATTTGGTTCATTGCTTTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTC 657304 Query 179719 AACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAAC 179778 ||||| || | |||| ||||||| | ||| |||| || ||||| || | | ||| Sbjct 657303 AACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTGATATTATTAAC 657244 Query 179779 CGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 179838 ||||| | |||||||||||||||||||| ||||| || || |||||||| || ||| Sbjct 657243 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 657184 Query 179839 CTTGCTGCTGCTGA 179852 || ||||||| ||| Sbjct 657183 CTAGCTGCTGTTGA 657170 >seq17 Length=3754437 Score = 486 bits (538), Expect = 2e-132 Identities = 694/971 (71%), Gaps = 6/971 (1%) Strand=Plus/Minus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || ||||| || ||| | || |||| ||| ||| | ||| Sbjct 3587973 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCC 3587914 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| ||||| || | || Sbjct 3587913 GTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCG 3587854 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | ||||| ||| ||||| | || || || || || || |||||| | Sbjct 3587853 AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATAG 3587795 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | |||||| | | || | ||||||||||| | || || |||| || || Sbjct 3587794 TTTAGCACATTCTTTGTTATTATTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 3587735 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || | |||| ||| || |||||||||||||| || | ||||| || Sbjct 3587734 GTGTCAATTAGGTGGTTTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGG 3587675 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACG-TCTTATTGGTATC-CGTCCTTACAATGCT 180407 |||||| |||| || |||||||| || || ||| || || || ||||| ||||| Sbjct 3587674 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTG--TGCAATTGCGACCTTATAATGCA 3587617 Query 180408 ATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGT 180467 || |||||||||| ||| || ||||| ||||| ||||| || || || ||| | || Sbjct 3587616 ATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCATTAGGC 3587557 Query 180468 CAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTC 180527 ||||| ||||||| ||||| || |||||| |||||||| || ||| ||||| | ||| Sbjct 3587556 CAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTC 3587497 Query 180528 TTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGT 180587 ||| | || || || || |||||||| || ||||| || ||||||||||||||||| || Sbjct 3587496 TTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGC 3587437 Query 180588 ATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTAT 180647 || | || | || |||||| || || ||||| | ||||| || || || | | | Sbjct 3587436 GTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 3587377 Query 180648 GAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACT 180707 |||||||| || ||||| || || || ||| | |||| |||| || |||||| Sbjct 3587376 GAAGATGGTGATGGTGCAAATACATTCCGTGCCTTTAACCCAACTCAAGCTGAAGAAACT 3587317 Query 180708 TACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAAC 180767 || || |||||||| || |||||||| ||||| || ||||| || | || ||||| || Sbjct 3587316 TATTCAATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTAGCTTTTTCCAAT 3587257 Query 180768 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCT 180827 || | ||| | ||||| || ||||| ||||| || || | ||| |||||| | || Sbjct 3587256 AAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCT 3587197 Query 180828 ATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATC 180887 |||| | | | ||| ||||| || || |||| || || ||||| ||| || || Sbjct 3587196 CTTGGAGTGGTCGATCTAGCTCTGAATCTATGTGCCTATGACTTCGTTTCTCAGGAAATT 3587137 Query 180888 AGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAA 180947 | ||||||||||||||||| || ||||| |||||||| || || || || || |||||| Sbjct 3587136 CGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAATGAA 3587077 Query 180948 GGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAA 181007 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| Sbjct 3587076 TTTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 3587017 Query 181008 GAAGTTCTACC 181018 || |||||||| Sbjct 3587016 GAGGTTCTACC 3587006 >seq43 Length=3080068 Score = 455 bits (504), Expect = 4e-123 Identities = 561/763 (74%), Gaps = 3/763 (0%) Strand=Plus/Minus Query 178984 GTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATC 179043 || |||||||| || || |||||||| || |||| || || | ||||||||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 179044 ATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGG 179103 || |||||||| || | || | ||| || || ||| | || || ||||| || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 179104 GAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTC 179163 ||||| ||||| | ||||| ||| | ||||| || |||||| | || | || || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 179164 CACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTA 179223 |||||| | | || | | || ||||| ||||||||||||||| || |||||| Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 179224 GGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTA 179283 |||||||| || ||||| ||||||||| || || || || || ||||| | ||| || Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 179284 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCT 179343 ||| | | ||||| | ||||| || || ||||||| ||||||||| || |||||| Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 179344 GGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTC 179403 |||||||| |||| ||| |||||||||| || || |||||||||||||||||||| || Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 179404 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 179463 || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 179464 CTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTA 179522 | || || | || | ||| || | ||||| || || | || || || | ||||| Sbjct 2030693 TTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 2030635 Query 179523 TAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCG 179582 | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || || || Sbjct 2030634 CAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCG 2030575 Query 179583 TTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGC 179642 ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct 2030574 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGC 2030515 Query 179643 GTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCT 179702 ||||| || || || || |||||||||||| | || | || ||||| |||||||| Sbjct 2030514 TTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCT 2030455 Query 179703 CAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745 || |||||||| |||||||| || | |||| |||||||| Sbjct 2030454 AAATGGTTTCAATTTCAACCAATCTGTAGTTGA-TGTCAAGGA 2030413 >seq404 Length=1096556 Score = 425 bits (470), Expect = 7e-114 Identities = 485/649 (75%), Gaps = 2/649 (0%) Strand=Plus/Minus Query 179201 AGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCAC 179260 ||||||||||| || |||| | |||||||| || ||||| | ||||||| || |||| Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358 Query 179261 CAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 179320 | || || |||| | ||| || ||| | | ||||| | ||||| || || |||| Sbjct 544357 CTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTG 544298 Query 179321 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 179380 ||| ||||||||| || |||||||||||||| |||| ||| |||||||||| || || | Sbjct 544297 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 544238 Query 179381 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 179440 ||||||||||||||||||| || || ||| | || || ||||| |||||||| || || | Sbjct 544237 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 544178 Query 179441 TTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAG 179499 | ||| ||||||||| || | || || || | | ||| || | ||||| || || Sbjct 544177 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAA 544119 Query 179500 ACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTC 179559 | || || || | ||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 544118 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 544059 Query 179560 GCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGC 179619 || || ||||| || || || || ||||||||||||||||| || |||||||| || Sbjct 544058 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 543999 Query 179620 TCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGC 179679 ||||| || |||||||| ||||| ||||| | || || || ||| |||||||| | || Sbjct 543998 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGT 543939 Query 179680 GTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGT 179739 | || ||||| |||||||| || |||||||| |||||||| || | |||| || Sbjct 543938 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 543879 Query 179740 CAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAA 179799 ||||| ||||| |||| || ||||| || | | |||||||| | ||||||||| Sbjct 543878 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 543819 Query 179800 GTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 ||||||||||| ||||| || || |||||||| || ||||| ||||||| Sbjct 543818 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 543770 Score = 105 bits (116), Expect = 8e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 178901 TTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATC 178959 |||| ||||| ||||| ||||||| ||||| || | | |||||| ||||| || || Sbjct 545933 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATT 545875 Query 178960 GTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGT 179019 | |||||| | || || ||||| || |||||||| || || |||||||| || |||| Sbjct 545874 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 545815 Query 179020 TCACTCATGTATGGAAACAACATCATCTCTGGTGC 179054 || || | ||||||||||| || || |||||||| Sbjct 545814 TCTCTACTTTATGGAAACAATATTATTTCTGGTGC 545780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610272747797760