Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1752 212 9e-50 seq320 136 5e-27 seq755 127 3e-24 seq79 122 1e-22 seq219 109 8e-19 >seq1752 Length=70440 Score = 212 bits (234), Expect = 9e-50 Identities = 601/915 (66%), Gaps = 10/915 (1%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 |||||||| || || || || || ||||| | ||||| || ||||| || || ||| Sbjct 24226 GACATAACGGCCGCCTTCTGATACTCTCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCT 24285 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | || || || ||||| ||||||| ||||||| |||| || | ||| | Sbjct 24286 TGCAGCGAGATCAGCTCCATCCAATCAAAAGGATTAGCCACATTGTAGATCTTTCCGTAC 24345 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || | | | ||| ||||| || || || || ||||| |||||| || | | Sbjct 24346 CCAAGCGCACCCAACAACCTATCAGCCACGAACTCAATGTACTGGCTCATCAGCTCTCCA 24405 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || | | | ||| || || || | |||||| | ||||| || || Sbjct 24406 TTCATCCCCACCAAGGCACATGGAAGCGCATCGCACACAAACTCCCTCTCGATATCCACT 24465 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAAC 39610 || ||| | |||| | || ||| || ||| || | ||| | | Sbjct 24466 GCGTCTCGCACTATCCCCTTCACACGCTCCTCGCTCAACTTATTCCGTAACAGCCCGTAT 24525 Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 | || || ||||||||||| || | ||||||||||| || || ||||| || ||| Sbjct 24526 AGCAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAAT 24585 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGA 39729 || | ||| ||||| | |||||||| || ||||||||||| || ||||||| |||||| Sbjct 24586 GTTAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGA 24644 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC--- 39786 ||| || || || || || ||||| || | || ||||||| || || || Sbjct 24645 AAAAAATATTCCCTCCACACAGGCAAAAGCGATCAG--CCTCTCCGCAA-AAGTCTCCGA 24701 Query 39787 ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 | || |||||| | | ||||| |||||||| || |||||||| | || || || Sbjct 24702 ACCATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAAT 24761 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 |||| ||| | || || || | |||||||| ||| || || | || ||||| Sbjct 24762 TGCATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACT 24821 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||| || |||||||| |||||||| || || || ||||| || ||| | || || Sbjct 24822 GTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTC 24881 Query 39967 AGTAATTTGTACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 || || || || | || | |||| | | | || | ||||| || || ||||| Sbjct 24882 AGCAACCTGGACTTCCTTCATAAAA-CGTCCAGCGAGGTTTTCGAGAACGATACCATCGG 24940 Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTAT 40085 |||||||| ||||| | ||||| | | ||| | |||||||||||||| | | Sbjct 24941 AGGCGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTT 25000 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 ||||| || ||||| || | ||| || || ||||| |||||||| || ||||| | Sbjct 25001 CCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGG 25060 Query 40146 CCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTG 40205 | || || ||||| | ||| || | | |||| ||||| || ||| || | || || Sbjct 25061 CTTTCTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAAACGATCTG 25120 Query 40206 GATTTTTTGCAAGGA 40220 ||| ||||||| Sbjct 25121 AGTTTGGGGCAAGGA 25135 >seq320 Length=1281786 Score = 136 bits (150), Expect = 5e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| ||| | ||||||| |||| | ||||| ||||| |||||||| || Sbjct 81808 TCCACCTTGATCAGCGTAGCGCGCAGTGTCATTAAACACTCTAAGCATAGGAATAATGCC 81867 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||| | ||| ||| ||||| ||| || ||||||||| | ||| Sbjct 81868 ATTGGAACTCCCATTTATCCCACGAATGTAACTGCCTGCAGCACGAATATTATGCACAGA 81927 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || | || || | |||||| ||||| || ||| |||| Sbjct 81928 AAGACCAATTCCTCCAGCTAGCTTGCTAATAACAGCACACTCCTTCAAAGTATCAAATAT 81987 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | |||||| |||||| Sbjct 81988 GCCCTCAATGCTATCATCTTTCATGCACACAAGAAAGCAGCTA 82030 >seq755 Length=570705 Score = 127 bits (140), Expect = 3e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | | ||| |||| ||| || Sbjct 116405 TCCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCC 116464 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| ||||||||| || | || |||||||| || || Sbjct 116465 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGA 116524 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| |||| ||| | |||||| ||||| || |||||||| Sbjct 116525 GACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATAT 116584 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 116585 GCCTTCAATACTATCATCTTTCATG 116609 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | || || ||||| |||||||||||| || ||| | || || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 70051 TATGTTTCAATAGCTGATTCTATATC--CCACTGATGAATTCCTATCGCGACACGCATCA 70108 || |||| ||| | || || ||||| ||| || |||||||| | || || | ||||| Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCA-TG-TGAATTCCAACAGCAACTCTCATCA 116932 Query 70109 ACATATGCTGAGGTCGTTCTAC 70130 ||| |||||||||| ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTAC 116954 >seq79 Length=2571107 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || | | ||| |||| |||||| Sbjct 116399 TCCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACC 116458 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| |||||| | || | || |||||||| |||||| Sbjct 116459 ATTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGA 116518 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || |||||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 116519 GACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq219 Length=1577337 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || ||||||| |||| | |||| ||||| |||||||| || Sbjct 925331 TCCTCCTTGATCAACATAGTGAGCAGTGTCATTAAAAACTCATAGCATAGGAATAATGCC 925272 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||| ||| |||||||||||| | | |||||||| | ||| Sbjct 925271 ATTGGAATGCCCATTTGTCCCACTGATATAACTTCCTGTAGAATGAATATTATATACAGA 925212 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || | || || | |||||| ||| | || ||| |||| Sbjct 925211 AAGACCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTTCTTCCAAGTATCAAATAT 925152 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||| ||||||| || | ||||| | ||||||| |||| Sbjct 925151 GTCCTTGATGCTATAATATTTCATGCACACAAGAAAAATGCTA 925109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686844814445280