Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1752 219 3e-52 seq1209 91.5 1e-13 seq949 91.5 1e-13 >seq1752 Length=70440 Score = 219 bits (242), Expect = 3e-52 Identities = 404/586 (69%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||| |||| | | || ||| ||||||| || ||||| |||| || |||| Sbjct 25105 TGTTCCCAATTGAATACCCACAAATCTGGGAAATGTATAAGAAAGCCGAGGCCTCCTTTT 25046 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || || || ||| | || |||| || || || ||| || ||| ||| Sbjct 25045 GGACTGCTGAGGAGGTCGATCTCTCTCAAGATCTCCGC-CACTGGGAAGCCCTAACACCC 24987 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | ||||| || ||| | | ||| | || || ||||| || ||| || || || Sbjct 24986 GATGAAAAGCACTTTGTCACCCATGTTCTTGCATTCTTTGCCGCCTCCGATGGTATCGTT 24927 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||||| | | | | || ||| | | ||||| || | | || || || ||| Sbjct 24926 CTCGAAAACCTCGCTGGACGTTTTATGAAGGAAGTCCAGGTTGCTGAGGCTCGTGCTTTC 24867 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||| || || |||||||| ||||| || |||||||||||| || | || Sbjct 24866 TATGGATTCCAAATCGCTATTGAAAATATCCATTCCGAGATGTACAGTCTTTTGTTGGAG 24807 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || || || |||||| |||||||| |||| |||||| |||| || || || || || Sbjct 24806 ACTTATATTAAAGATTCCAACGAGAAGAATCGCTTGTTTCATGCAATTGAGACTGTCCCT 24747 Query 44065 --TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 || | |||| ||||| || |||||||| | ||||| || || ||||| Sbjct 24746 TGTGTGGCTAAA---AAAGCTGAGTGGGCCCTCAGGTGGATCGATGGTTCGGAGACTTTT 24690 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGC 44181 | || | || |||| ||||| |||||| || || || ||||| || | | ||||| Sbjct 24689 GCGGAGAGGCTGATCGCTTTTGCCTGTGTGGAGGGAATATTTTTTTCTGGAAGCTTTTGC 24630 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || ||||||||| ||||||| || || |||||||| || || || || ||||| ||||| Sbjct 24629 -GCGATATTTTGGCTAAAGAAGCGTGGCTTGATGCCGGGATTAACATTCTCAAACGAGTT 24571 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 || || ||||| ||||| || || || || || || ||| || Sbjct 24570 GATCTCGCGAGATGAGGGCTTGCACTGTGACTTCGCGTGTTTGCTA 24525 >seq1209 Length=217254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||| | |||||| | || |||||||| || ||||| || ||||||||||||| Sbjct 71861 CCATTTTCTGGCTTAAGAAAAGGGGCTTGATGCCAGGTTTGACATTCTCAAATGAGTTAA 71920 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || | ||||||||||| ||||| || ||||||||| Sbjct 71921 TATCCAGAGATGAAGGCTTGCATTGTGACTTTGCTTGC 71958 >seq949 Length=384296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||| | |||||| | || |||||||| || ||||| || ||||||||||||| Sbjct 269454 CCATTTTCTGGCTTAAGAAAAGGGGCTTGATGCCAGGTTTGACATTCTCAAATGAGTTAA 269395 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || | ||||||||||| ||||| || ||||||||| Sbjct 269394 TATCCAGAGATGAAGGCTTGCATTGTGACTTTGCTTGC 269357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419902549260