Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq56 113 4e-20 seq687 93.3 4e-14 seq154 89.7 4e-13 seq887 86.0 5e-12 seq629 86.0 5e-12 seq68 86.0 5e-12 seq61 86.0 5e-12 seq1759 82.4 6e-11 seq558 82.4 6e-11 >seq56 Length=2885905 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| ||||| || | || | || || || || ||||||||||||||| Sbjct 2370397 CCACCCCTCAAACGCAACACTAGGTGGAGAGTCGACTCCTTCTGAATATTGTAGTCGGCA 2370338 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||| || || || |||||| | ||||| ||||| || ||||| || Sbjct 2370337 AGGGTCCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG 2370278 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | |||||| | || || || Sbjct 2370277 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATAGTGTCCGAGGACTCTACC 2370218 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | |||||||| || ||||| || ||||| ||||| Sbjct 2370217 TCGAGAGTTATGGTCTTGCCCGTTAGGGTTTTGACGAAGATCTGCAT 2370171 >seq687 Length=650195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || ||||||||||||||| | | |||| | || || Sbjct 286985 ACCAAATGGAGAGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGGCCATCCTCT 286926 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| ||| | || || | ||| || || || || | |||||||| || Sbjct 286925 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCTTTGTCCTGT 286866 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||||| | ||||| || || || || | ||| Sbjct 286865 ATCTTAGCCTTAACATTGTCAATTGTGTCTGAGCTCTCAACCTCAAGGGTGATTGTCTTG 286806 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||||||||| |||||||| Sbjct 286805 CCAGTGAGGGTTTTCACAAAAATTTGCAT 286777 >seq154 Length=1955999 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CT 27079 ||||| | ||| || | |||| ||| | ||||| || || ||||| || |||||| || Sbjct 1202950 CCTCCCCTCAAACGGAGAACCAGATGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCT 1203009 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | || || ||||| || ||||| | || | | ||| || || || || Sbjct 1203010 AAGGTCCTGC-CATCCTCTAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 1203068 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||||| || | | | || | ||||| | | ||||| Sbjct 1203069 GATCCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATTGTGTCAGAGCTCTCAAC 1203128 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | ||||| || ||||| ||||||||||| ||||| Sbjct 1203129 CTCAAGAGTTATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1203176 >seq887 Length=435773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | || || || || || || ||||| ||| Sbjct 324280 TGCCACCCCTCAAACGAAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCGG 324339 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | || || || || || || || | ||||| | ||| || || || | Sbjct 324340 CCAGTGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTG 324399 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| |||||| ||||| | | || | |||||||| ||| | Sbjct 324400 GGATCCCTTCCTTATCCTGAATCTTGGCTTTCACGTTGTCAATAGTGTCTGAACTTTCCA 324459 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAA 27257 | |||||||| |||| || || || || ||||||||||| || ||||| ||||| || Sbjct 324460 CCTCTAGAGTGATAGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT--CTGCTTAA 324516 >seq629 Length=730630 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| ||||| ||||| || | | || |||| || ||||| || ||| Sbjct 101943 GTGGACTCCTTTTGGATATTATAGTCAGCCAAGGTACGGCCGTCCTCAAGCTGCTTCCCG 101884 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || ||||| || ||| ||| ||| Sbjct 101883 GCGAAGATGAGACGCTGCTGGTCAGGTGGGATCCCTTCTTTGTCTTGGATTTTGGCTTTG 101824 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || || ||||| |||| || || || || || Sbjct 101823 ACGTTATCGATGGTGTCACTGCTCTCGACCTCGAGAGTGATAGTCTTTCCGGTGAGGGTC 101764 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 101763 TTAACGAAGATCTGCAT 101747 >seq68 Length=2695109 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 |||||||| | || || || || || || || ||||| || || |||| | ||||| Sbjct 1665995 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAG-CAAGTGTGCGGCCATCTTC 1666053 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||| || || | || || | ||| ||||| || || | ||||| || || Sbjct 1666054 GAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTG 1666113 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | || |||| | |||||||| | || || | || Sbjct 1666114 GATCTTGGCTTTTACATTGTCAATTGTATCTGAGCTCTCAACTTCCAAGGTAATCGTCTT 1666173 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || ||||||||||| |||||| Sbjct 1666174 GCCAGTAAGGGTCTTCACAAAGATCTGCATA 1666204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 |||||| || | || || || ||||| || ||||||||| | ||||| | || || Sbjct 1665310 TACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTC 1665369 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || || | ||| ||||| || || | ||||| || || Sbjct 1665370 AAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1665429 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | |||||||| | ||||| | || Sbjct 1665430 GATCTTGGCCTTAACATTATCAATGGTGTCAGAGCTCTCAACTTCCAAGGTTATGGTCTT 1665489 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| ||||||||||| |||||| Sbjct 1665490 TCCAGTCAAAGTCTTCACAAAGATCTGCATA 1665520 >seq61 Length=2804743 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||||||| | || || ||||| ||||| |||||||| | | || || Sbjct 1592642 CGCAGCACCAAATGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTACGGTCA 1592583 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| || || | || || | ||| ||||| || || | ||||| || Sbjct 1592582 TCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTG 1592523 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| || | | | | || || | | ||||||||| | ||| || Sbjct 1592522 TCCTGAATCTTAGCCTTAACATTGTTAATGGTATCAGAGCTTTCAACTTCCAAAGTGATG 1592463 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || ||||||||||||||||||||||| Sbjct 1592462 GTCTTCCCTGTAAGAGTTTTCACAAAGATTTGCAT 1592428 >seq1759 Length=69365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||| |||||| || | |||| ||||||| |||||||| || Sbjct 30953 GTTGACTCCTTCTGGATATTATAGTCGGCCAAGGTGCGGCCGTCTTCAAGCTGTTTTCCA 31012 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | || |||||||| || | ||||| || || |||||| || Sbjct 31013 GCAAAGATCAATCTTTGCTGATCCGGTGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTA 31072 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || ||||||||||| || | ||||| || || ||| Sbjct 31073 ACGTTATCGATGGTATCGGAGCTCTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGGGTT 31132 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| || || |||||| Sbjct 31133 TTCACGAAAATCTGCATA 31150 >seq558 Length=819058 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | || | ||||| || | || || || || || || |||||||| Sbjct 127112 GCCACCACGGAGACGAAGTACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC 127053 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || | || || || || || |||||| | || || ||||| ||||| || || Sbjct 127052 GAGAGTACGGCCATCCTCCAGTTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGG 126993 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | || | ||||| | || ||||| Sbjct 126992 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAAC 126933 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||| || |||||||||||||| ||||| Sbjct 126932 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 126885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424895806926624