Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq262 141 1e-28 seq3681 136 5e-27 seq3123 136 5e-27 seq73 96.9 4e-15 seq320 91.5 2e-13 seq198 86.0 8e-12 >seq262 Length=1443145 Score = 141 bits (156), Expect = 1e-28 Identities = 284/420 (68%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| || || || | | |||||| || ||||| || | || ||||| | | ||||| Sbjct 905646 ATCTAGAATGTCTGCCCTATTAGTAGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 905587 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | || |||| || |||||||| ||||||||| || Sbjct 905586 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC--- 905530 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| || | || | |||| | || || |||||||| ||||| | || ||||| || Sbjct 905529 ACCAATGCCGGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 905470 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || |||||| ||| | | |||||||| || ||||| |||||| |||||||| Sbjct 905469 AGGAGCATTTTCTTTGGCCTTCTTGAAGAGATCACGGACCCTAGAGGCACCAACACCAAC 905410 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | |||| || ||||| ||| | |||||| || Sbjct 905409 AAACATCTCAACAAACTCAGAACCAGATATGGAGAAAAATGGAACACCAGCTTCACCAGC 905350 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 ||||| ||| || || |||||||| || ||||| ||| | |||||| | ||| Sbjct 905349 AATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACCTTT 905290 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| | || ||||||| || | ||| ||||| || || | ||| Sbjct 905289 TGGAATGCGAGCCCCAACTGCAGTGAATCTCTCCGGCTTCTTCAGAAACTCAACTACCTC 905230 >seq3681 Length=11741 Score = 136 bits (150), Expect = 5e-27 Identities = 283/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| || || || | | |||||| || ||||| || | || ||||| | | ||||| Sbjct 6529 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 6588 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | || |||| || |||||||| ||||||||| || Sbjct 6589 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC--- 6645 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| || | |||| | || || |||||||| ||||| | || ||||| || Sbjct 6646 ACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 6705 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| || ||| | | || ||||| || || || |||||| |||||||| Sbjct 6706 AGGAGCATTATCTTTGGCCTTCTTGAAAAGATCACGGACTCTAGAGGCACCAACACCAAC 6765 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | |||| || ||||| ||| | |||||| || Sbjct 6766 AAACATCTCAACAAATTCAGAACCAGATATGGAGAAAAATGGAACACCAGCTTCACCAGC 6825 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 ||||| ||| || || |||||||| || ||||| ||| | ||||| | ||| Sbjct 6826 AATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACACCTTT 6885 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| | || ||||||| || | ||||||||| || |||| ||| Sbjct 6886 TGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCTC 6945 >seq3123 Length=17441 Score = 136 bits (150), Expect = 5e-27 Identities = 283/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| || || || | | |||||| || ||||| || | || ||||| | | ||||| Sbjct 4553 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 4494 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | || |||| || |||||||| ||||||||| || Sbjct 4493 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC--- 4437 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| || | |||| | || || |||||||| ||||| | || ||||| || Sbjct 4436 ACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 4377 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| || ||| | | || ||||| || || || |||||| |||||||| Sbjct 4376 AGGAGCATTATCTTTGGCCTTCTTGAAAAGATCACGGACTCTAGAGGCACCAACACCAAC 4317 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | |||| || ||||| ||| | |||||| || Sbjct 4316 AAACATCTCAACAAATTCAGAACCAGATATGGAGAAAAATGGAACACCAGCTTCACCAGC 4257 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 ||||| ||| || || |||||||| || ||||| ||| | ||||| | ||| Sbjct 4256 AATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACACCTTT 4197 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| | || ||||||| || | ||||||||| || |||| ||| Sbjct 4196 TGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCTC 4137 >seq73 Length=2663303 Score = 96.9 bits (106), Expect = 4e-15 Identities = 227/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTC--- 11538 |||||| | ||| | ||||||||| || |||| || || || | |||| | Sbjct 1643114 ATCAAGAACATCAGGTCTATTAGTGGCAGC--TAAC-ACTATAACACCCGAATTGCCCGA 1643058 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || |||||||||||||| ||||||||||||||| | Sbjct 1643057 AAACCCATCCATTTCAGTCAACAACTGATTAATTGTTTGCTCTCTCTCATCATTTCC--A 1643000 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | ||||| ||||||||||||||||| || ||||| Sbjct 1642999 CCTCCAAGCCCCGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATAAATACAATG 1642940 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | ||||| | ||| | || ||| || || || || Sbjct 1642939 CACGGAGCCTTCGCCTTGGCTTTCTCAAACAAATCTCTCACTCTTGATGCCCCAACTCCC 1642880 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || |||| ||||||||| | | || | ||| || ||||| || || || || Sbjct 1642879 ACGAACAACTCCACAAACTCCGATGCCGCGCAAGAGAAAAATGGCACTCCTGCCTCTCCA 1642820 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | |||||||| || || || || Sbjct 1642819 GCAACAGCTCTAGCCAACAGGGTCTTCCCTGTTCCAGG 1642782 >seq320 Length=1281786 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 112009 ||||| ||||||||||| || || || || || || ||||| || || |||||| | Sbjct 82163 GGTGTTCCAGCATTGAAAAGCGTAGGGGTAGCATGTGTGAACCAACGCTGAGACATCAAG 82222 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | |||||| | | || || |||||||| || |||||| || | || |||| ||| Sbjct 82223 TAGTATGTTTTGACAACGGAGTCAATGTCATCTTTGTGGATACCAACAGCAACCCTCATC 82282 Query 112070 AACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCA 112129 ||||||| ||||| |||| | | | |||| | | ||| ||| | ||||| Sbjct 82283 AACATGTGTTGTGGTCTTTCTACAATTTTCCCATTAACCTTCAAAAGGTAGGACCTCTCA 82342 Query 112130 AGGGTTTTGAGACCAAAGTAACCAAAATCA 112159 || ||||||| ||||||||| || | ||| Sbjct 82343 AGAGTTTTGAAGCCAAAGTAATCATAGTCA 82372 >seq198 Length=1693215 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/201 (69%), Gaps = 12/201 (6%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | ||||||||||| || || ||||||||||||||| | Sbjct 475905 AAATCCATCCATTTCAGTCAACAATTGATTAATAGTCTGCTCTCTCTCATCATTTCC--- 475961 Query 11599 CATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 ||||||| || | | ||| | ||||| ||||||||||||||||| || || Sbjct 475962 ---ACCACCAAGCCCCGCTCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATAAATAC 476018 Query 11653 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 ||| || || || | ||| | ||||| | ||| | || ||| || || || Sbjct 476019 AATGCACGGAGCCTTCGCCTTGGCTTTCTCAAACAAATCTCTCACTCTTGATGCCCCAAC 476078 Query 11713 ACCAACAAACATCTCCACAAA 11733 || || |||| ||| ||||| Sbjct 476079 TCCCACGAACAACTCTACAAA 476099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627973498819200