Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq262 100 4e-16 seq3681 95.1 1e-14 seq3123 95.1 1e-14 >seq262 Length=1443145 Score = 100 bits (110), Expect = 4e-16 Identities = 233/344 (68%), Gaps = 18/344 (5%) Strand=Plus/Minus Query 14114 TTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTC 14170 || || || || ||||||| ||| || || |||| ||||| |||||||| || ||| Sbjct 905627 TTAGTAGCTGCAATGACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTC 905571 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTG 14227 || || || || | ||| ||||| | ||||||||| | |||| || | || Sbjct 905570 AAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC---ACCAATGCCGGTACCT 905514 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 | |||| | || || || ||||||||||| | || || || || || |||||| | Sbjct 905513 CTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTTTCTTTG 905454 Query 14288 GCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 14345 || |||| |||| ||| || || || |||||| ||||| ||||||||||| |||| Sbjct 905453 GC--CTTCTTGAAGAGATCACGGACCCTAGAGGCACCAACACCAACAAACATCTCAACAA 905396 Query 14346 AATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCG 14404 | | | | | | || | || || || || || |||||| || ||||| ||| Sbjct 905395 ACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCAGCAATGGCCTTGGCT 905337 Query 14405 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 || || ||||| || || ||||| || | |||||| |||| Sbjct 905336 AGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACC 905293 >seq3681 Length=11741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 219/322 (68%), Gaps = 16/322 (5%) Strand=Plus/Plus Query 14114 TTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTC 14170 || || || || ||||||| ||| || || |||| ||||| |||||||| || ||| Sbjct 6548 TTAGTTGCTGCAATGACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTC 6604 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTG 14227 || || || || | ||| ||||| | ||||||||| | |||| || | || Sbjct 6605 AAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC---ACCAATGCCAGTACCT 6661 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACG 14286 | |||| | || || || ||||||||||| | || || || || || ||| || | Sbjct 6662 CTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTATCTTTG 6721 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | | ||| ||| | ||| || ||||| |||||| ||||| ||||||||||| ||||| Sbjct 6722 GCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAA 6780 Query 14347 ATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | | | | || | || || || || || |||||| || ||||| ||| | Sbjct 6781 TTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCAGCAATGGCCTTGGCTA 6839 Query 14406 GGAGGGTCTTCCCCGTCCCTGG 14427 | || ||||| || || ||||| Sbjct 6840 GAAGAGTCTTTCCAGTTCCTGG 6861 >seq3123 Length=17441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 219/322 (68%), Gaps = 16/322 (5%) Strand=Plus/Minus Query 14114 TTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTC 14170 || || || || ||||||| ||| || || |||| ||||| |||||||| || ||| Sbjct 4534 TTAGTTGCTGCAATGACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTC 4478 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTG 14227 || || || || | ||| ||||| | ||||||||| | |||| || | || Sbjct 4477 AAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC---ACCAATGCCAGTACCT 4421 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 | |||| | || || || ||||||||||| | || || || || || ||| || | Sbjct 4420 CTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTATCTTTG 4361 Query 14288 GCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || ||| ||| | ||| || ||||| |||||| ||||| ||||||||||| ||||| Sbjct 4360 GCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAA 4302 Query 14347 ATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | | | | || | || || || || || |||||| || ||||| ||| | Sbjct 4301 TTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCAGCAATGGCCTTGGCTA 4243 Query 14406 GGAGGGTCTTCCCCGTCCCTGG 14427 | || ||||| || || ||||| Sbjct 4242 GAAGAGTCTTTCCAGTTCCTGG 4221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618377592761120