Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq262 168 8e-37 seq3681 163 3e-35 seq3123 163 3e-35 >seq262 Length=1443145 Score = 168 bits (186), Expect = 8e-37 Identities = 291/417 (70%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || || || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 905646 ATCTAGAATGTCTGCCCTATTAGTAGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 905587 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 905586 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 905530 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| || | || | |||| |||| || |||||||| ||||| | || || ||||| Sbjct 905529 ACCAATGCCGGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 905470 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || |||||| || |||| |||||||| || || | ||| || |||||| Sbjct 905469 AGGAGCATTTTCTTTGGC--CTTCTTGAAGAGATCACGGACCCTAGAGGCACCAACACCA 905412 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | | | || | || || || ||| || |||||| Sbjct 905411 ACAAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACC 905353 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 |||||||| ||| ||||||||||| || || ||||| ||| | || ||| |||| Sbjct 905352 AGCAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACC 905293 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | |||||| || ||| | || | ||||||| || | ||| ||||| || || Sbjct 905292 TTTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCCGGCTTCTTCAGAAACTCAAC 905236 >seq3681 Length=11741 Score = 163 bits (180), Expect = 3e-35 Identities = 291/418 (70%), Gaps = 10/418 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || || || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 6529 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 6588 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 6589 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 6645 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| || | |||| |||| || |||||||| ||||| | || || ||||| Sbjct 6646 ACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 6705 Query 9733 TGGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || | | ||| ||| ||||| || || | ||| || ||||||| Sbjct 6706 AGGAGCATTATCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCAA 6764 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | || | || || || ||| || |||||| Sbjct 6765 CAAACATCTCAACAAATTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCA 6823 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 |||||||| ||| ||||||||||| || || ||||| ||| | || || ||||| Sbjct 6824 GCAATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACACCT 6883 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 |||||| || ||| | || | ||||||| || | ||| ||||| || |||| Sbjct 6884 TTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAA 6941 >seq3123 Length=17441 Score = 163 bits (180), Expect = 3e-35 Identities = 291/418 (70%), Gaps = 10/418 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || || || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 4553 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 4494 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 4493 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 4437 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| || | |||| |||| || |||||||| ||||| | || || ||||| Sbjct 4436 ACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 4377 Query 9733 TGGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || | | ||| ||| ||||| || || | ||| || ||||||| Sbjct 4376 AGGAGCATTATCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCAA 4318 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | || | || || || ||| || |||||| Sbjct 4317 CAAACATCTCAACAAATTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCA 4259 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 |||||||| ||| ||||||||||| || || ||||| ||| | || || ||||| Sbjct 4258 GCAATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACACCT 4199 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 |||||| || ||| | || | ||||||| || | ||| ||||| || |||| Sbjct 4198 TTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAA 4141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583206469256480