Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq345 520 1e-142 seq43 435 4e-117 seq404 412 4e-110 >seq345 Length=1218342 Score = 520 bits (576), Expect = 1e-142 Identities = 645/883 (73%), Gaps = 0/883 (0%) Strand=Plus/Minus Query 176218 TTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTA 176277 || ||||| || || || || ||||| || |||||||| ||||| || | |||||||| Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997 Query 176278 CTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTA 176337 || ||||||||||| || || || || || | | || | || | || || || | Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937 Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 || || |||||||| |||||||| ||| | ||||| |||||| | |||||||| || || Sbjct 657936 CATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCT 657877 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGG 176457 || | || |||| | |||||| | | ||| | | ||||||||| || | ||| Sbjct 657876 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 657817 Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517 |||||||||| | | | || ||||| |||||||| ||||||||| || || || || Sbjct 657816 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 657757 Query 176518 TCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGT 176577 | || || | || |||||| | | |||||| | ||||| ||| || ||||||||| Sbjct 657756 GCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 657697 Query 176578 ATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAAC 176637 |||||||| || || || ||||| |||||||||||| |||||||||| || ||||||||| Sbjct 657696 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 657637 Query 176638 ATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTC 176697 || || ||||||||||| || ||| | || ||||| ||||| || || || || || ||| Sbjct 657636 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 657577 Query 176698 TCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAA 176757 || ||||| || | || || ||| | | || || || || ||||| ||| Sbjct 657576 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 657517 Query 176758 TCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817 || || | ||||||| |||||| ||||| ||||| || || || || |||||||| Sbjct 657516 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCT 657457 Query 176818 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT 176877 || ||||| ||||| || | |||||||| |||||| || ||| ||||| | | | Sbjct 657456 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTTG 657397 Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 || |||||| | || | || || || || | || ||||| | ||| | ||| || || Sbjct 657396 CATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGC 657337 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 || |||| |||||||| || | |||||| |||||||| ||||| | || | ||| Sbjct 657336 ACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 657277 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 | || ||| ||| |||| ||||| |||||||||| ||||||||||||||||||||| Sbjct 657276 CATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 657217 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 || || ||||||||||| |||||||| || ||||| ||||||| Sbjct 657216 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 657174 >seq43 Length=3080068 Score = 435 bits (482), Expect = 4e-117 Identities = 544/746 (73%), Gaps = 0/746 (0%) Strand=Plus/Minus Query 176236 GTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATC 176295 || ||||| || |||||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 176296 ATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGG 176355 || || || || | | || | || || || || | || || |||||||| ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 176356 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTC 176415 ||||| ||| | ||||| |||||| | || ||||| | || || | || |||| || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 176416 CACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTA 176475 |||||| | | ||| | | ||||||||| || | ||||||||||||| | | || Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 176476 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTT 176535 || ||||| |||||||| ||||||||| || || || || | || || | || ||| Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 176536 TTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCA 176595 ||| | | |||||| | ||||| ||| || ||||||||||||||||| || || || Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655 ||||| |||||||||||| |||||||||| || ||||||||||| || ||||||||||| Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715 || ||| | || ||||| ||||| || || || || || ||| || ||||| || Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 176716 CTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTAC 176775 | || || ||| | | || || || || ||||| ||||| || | |||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 176776 AAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGT 176835 | |||||| ||||| ||||| || || || || |||||||| || ||||| ||||| || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 176836 CTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCA 176895 | |||||||| |||||| |||||| ||||| | | | || |||||||| || || Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 176896 TTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTT 176955 | || || || | || ||||| ||||| | ||| || |||| ||||| |||||||| Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 176956 AACGGTTTCAACTTCAACCAGTCTGT 176981 || |||||||| |||||||| ||||| Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGT 2030428 >seq404 Length=1096556 Score = 412 bits (456), Expect = 4e-110 Identities = 479/646 (74%), Gaps = 0/646 (0%) Strand=Plus/Minus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | | || ||||| |||||||| | ||||||| || ||||| Sbjct 544415 TGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCACCT 544356 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | | || | || |||||| | | |||||| | ||||| ||| || |||||| Sbjct 544355 GTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGAT 544296 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||||| || || || ||||| |||||||||||| |||||||||| || |||||| Sbjct 544295 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 544236 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 ||||| || ||||||||||| || ||| | || ||||| ||||| || || || || || Sbjct 544235 AACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 544176 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC 176754 ||| || ||||| || | || || ||| | | || || || || ||||| Sbjct 544175 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAAT 544116 Query 176755 GAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCT 176814 ||||| || | ||||||| |||||| ||||| ||||| || || || || |||||| Sbjct 544115 GAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCT 544056 Query 176815 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGT 176874 || || ||||| ||||| || | |||||||| |||||| |||||| ||||| | | Sbjct 544055 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCT 543996 Query 176875 CTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTT 176934 | || |||||||| || || | || | || | || ||| | ||||| | ||| || Sbjct 543995 TTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGTATT 543936 Query 176935 TGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCT 176994 |||| ||||| |||||||| || |||||||| |||||||| ||||| | || | Sbjct 543935 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 543876 Query 176995 GGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTT 177054 ||| || ||| ||| |||| ||||| |||||||||| |||||||||||||||||| Sbjct 543875 GGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 543816 Query 177055 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||| || ||||||||||| |||||||| || ||||| ||||||| Sbjct 543815 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 543770 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 176148 TTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT-T 176206 |||| |||| ||||||||||| | ||||| || | | | || || | | ||| | Sbjct 545938 TTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTAT 545880 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 545879 TTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTT 545820 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAG 176308 | ||||||||||| ||||||||||| || || || || |||| Sbjct 545819 CTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCAG 545778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603438184496640