Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq61 87.8 1e-12 >seq61 Length=2804743 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || ||||||||| || || | || || || || | Sbjct 1592885 ATGCAAATATTTGTGAAAACACTCACTGGGAAAACCATCACGTTGGAAGTAGAGAGTTCG 1592944 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || |||||| |||||||| || | ||| || | Sbjct 1592945 GACACCATAGACAAT--GTGAAGGCAAAAATTCAAGACAAAGAGGGAATCCCGCCAGATC 1593002 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | ||||| ||||| || ||||| | || || | || | ||| | ||||| | Sbjct 1593003 AGCAGAGATTAATCTTTGCTGGTAAACAGATTGAAGATGGCCGTACGTTGGCTGATTATA 1593062 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| || ||||| ||||||| | ||| ||||||| || Sbjct 1593063 ATATCCAAAAGGAATCAACTTTACATTTGGCGCTTCGTCTGCGTGGTGG 1593111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355830080132004