Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq629 104 2e-17 seq68 96.9 3e-15 seq765 95.1 1e-14 seq61 95.1 1e-14 seq166 86.0 5e-12 >seq629 Length=730630 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| |||||||| || || | || || |||| |||||||| Sbjct 101949 TGAAGGGTGGACTCCTTTTGGATATTATAGTCAGCCAAGGTACGGCCGTCCTCAAGCTGC 101890 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || |||||||||||||| |||||| | || |||||||| |||||| Sbjct 101889 TTCCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGGATCCCT-TCTTTGTCTTGGATTTT 101831 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| | | | || || || ||| || || | |||||| | ||||| || Sbjct 101830 GGCTTTGACGTTATCGATGGTGTCACTGCTCTCGACCTCGAGAGTGATAGTCTTTCCGGT 101771 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || ||||| ||||| ||||||| || Sbjct 101770 GAGGGTCTTAACGAAGATCTGCATCTGTA 101742 >seq68 Length=2695109 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| ||| ||||| || ||||| || ||| Sbjct 1666205 CCACCTCTGAGTCGGAGTACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCAGCA 1666264 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || ||| | || |||||||||||||| ||||| || | | ||||||||| |||||| Sbjct 1666265 AGAGTGCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 1666324 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | || || ||| ||| | | |||| | | | | | || ||| |||| Sbjct 1666325 -ATTCCTTCCTTATCC-TGAATCTTGGTTTTCACATTGTCAATGGTGTCGGAGCTTTCCA 1666382 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | ||||| || || ||||| |||||||||||||||| Sbjct 1666383 CCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTCACAAAGATTTGCATCT 1666433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || || || || || |||||||| || | || ||| Sbjct 1665767 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGACCATCCTCA 1665826 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | ||||||||| | ||| | || ||| |||||| | Sbjct 1665827 AGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1665886 Query 39196 ATTTT 39200 ||||| Sbjct 1665887 ATTTT 1665891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || ||||| || |||||||| || | || || Sbjct 1665994 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGGCCATCTTC 1666053 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| Sbjct 1666054 GAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTG 1666113 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || ||| | | | | ||||| ||| ||| || |||| || || | Sbjct 1666114 GATCTTGGCTTTTACATTGTCAATTGTATCTGAGCT---CTCAACTTCCAAGGTAATCGT 1666170 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||| ||||| Sbjct 1666171 CTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 1666203 >seq765 Length=559349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || |||||||| || || || | || |||||||| || || || || Sbjct 186476 CTCCTTTTGGATGTTGTAATCGGCCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAA 186417 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 186416 GATGAGACGCTGCTGGTCAGGAGGGATTCCTTCTTTGTCCTGGATTTTGGCTTTGACGTT 186357 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || ||||| ||| || || | || || | ||||| || || || ||||| Sbjct 186356 ATCGATGGTGTCGCTGCTCTCGACCTCGAGAGTTATCGTCTTTCCGGTGAGGGTCTTAAC 186297 Query 39273 AAAGATTTGCATCTTTA 39289 ||||| ||||||| || Sbjct 186296 GAAGATCTGCATCTGTA 186280 >seq61 Length=2804743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | ||||||||| || ||| |||||| || || || || || ||| Sbjct 1592654 CCACCTCGGAGGCGCAGCACCAAATGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGCA 1592595 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || || || ||||||||||| || ||||| ||||| | |||||| || |||||| Sbjct 1592594 AGAGTACGGTCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGTGGG 1592535 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACT 39232 | | ||| |||||| ||| | | | | | | | | | ||||| ||| | Sbjct 1592534 -ATCCCCTCCTTGTCC-TGAATCTTAGCCTTAACATTGTTAATGGTATCAGAGCT---TT 1592480 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||| | || || || || ||||| |||||||||||||| Sbjct 1592479 CAACTTCCAAAGTGATGGTCTTCCCTGTAAGAGTTTTCACAAAGATTTGCAT 1592428 >seq166 Length=1910501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| |||||| || ||||| ||||| | || || || | | | | Sbjct 29904 ACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGTCAGGGTGCGGCCATTCTGA 29845 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || | | ||||||||| | || | | ||| |||||| | Sbjct 29844 AGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGAGATACCCTCCTTGTCCTGG 29785 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | || || ||| |||||| |||| ||||| | Sbjct 29784 ATCTTGACTTTCACATTGTCAATGGTGTC---CGAACTCTCCACCTCCAGGGTGATGGTC 29728 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || |||||||||||| |||| Sbjct 29727 TTTCCAGTGAGGGTCTTAACAAAGATTGGCAT 29696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429506588131676