Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1752 174 1e-38 >seq1752 Length=70440 Score = 174 bits (192), Expect = 1e-38 Identities = 373/550 (68%), Gaps = 7/550 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || ||||| ||||| || || |||| || | |||| ||||| || || || Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTC-GCGAGATCAACTCGTTTGAGAATGT 24587 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 |||||| ||||| || || | ||| || ||||||||||| ||| ||| |||||||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGCGCAAAAGCTTCCAGAAAA 24647 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||||| || || || |||||| || | | | | || || | | | | Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGA-TCAGCCTCTCCGCAA--AAGTCTCCGAACC 24704 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||| | | ||||| | ||||||||| || || || | || | || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | ||| || | | || || | |||| ||||||||| || | | || || || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTG 4902 ||| || ||||| |||||||| ||||| || || ||||| || |||||| | ||| || | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCA-CGAGCCTCAG 24883 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 || || ||||| || ||| | | | | | ||||||| || ||||| || || Sbjct 24884 CAACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGG 24943 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCC 5022 | ||||| || || | |||||| | | ||||| || ||| || || | || || || Sbjct 24944 CGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCC 25003 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||||| | | ||||| || | ||| || || ||| |||||||||| || || || |||| Sbjct 25004 AGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTT 25063 Query 5083 TTTTGTACAT 5092 | || ||||| Sbjct 25064 TCTTATACAT 25073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427010814821516