Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1752 205 1e-47 seq755 111 2e-19 seq79 105 9e-18 seq320 102 1e-16 >seq1752 Length=70440 Score = 205 bits (226), Expect = 1e-47 Identities = 414/610 (68%), Gaps = 6/610 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || || ||||| || | || ||||||| || || ||||| || ||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAA 48256 | || ||||| | ||||| || || ||||||||||| || || |||| | |||||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 ||||| || || || ||||| ||| | || ||||| || || | || || Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTC--CGCAAAAGTCTCCGAACCA 24705 Query 48317 T--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||||| | ||||| ||||| || || |||||||| | || || || ||| Sbjct 24706 TCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGCA 24765 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | ||| | || || || ||| |||||||| ||||| || | |||||||| ||| Sbjct 24766 TGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTAC 24825 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || ||||| || ||||||||||| || || || ||||| || ||| | || || | Sbjct 24826 ATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGCA 24885 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | ||| || ||| | ||| ||| |||| | || || || || ||||| || Sbjct 24886 ACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGCG 24945 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||| ||||| | ||||| | | ||| | ||||| | || || || | |||| Sbjct 24946 GCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCAG 25005 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | || ||||| || | ||| || || ||||| |||||||| || ||||| ||||| Sbjct 25006 TGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTTC 25065 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 |||||||| | ||| || | ||||| |||||||| ||| || | || || ||| Sbjct 25066 TTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAAACGATCTGAGTTT 25125 Query 48735 TTTGCAAGGA 48744 ||||||| Sbjct 25126 GGGGCAAGGA 25135 >seq755 Length=570705 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || | ||||| |||| ||| || Sbjct 116406 CCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCCA 116465 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| ||| | || |||||||| || ||| Sbjct 116466 TTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGAG 116525 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||| ||||| || || Sbjct 116526 ACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATATG 116585 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 116586 CCTTCAATACTATCATCTTTCATG 116609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| |||||||| || || | |||||||| || |||||| ||| ||| || Sbjct 115748 CTCTCTCTCATATTGGGTGTACAATTTCTCAAATTCTTCACCCCAACAATCCGACAAACC 115807 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || ||||| ||||| | |||||||| | |||| | | || ||||| || ||||| Sbjct 115808 TGGAGCCTCATTAGGGCAAAATAATGACCATTGCCCAT-TACTTTGAACTCTTTCCATAA 115866 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||||| ||| || ||| |||| ||| || | | |||||| || Sbjct 115867 AGAGATCAGGTACCCAAAGCGCATAGAATAAATCCCGTGCGCGATGTTCCTC 115918 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 77493 ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 77552 || |||| ||||||| |||||||||||||| |||||||||||||||| ||| || Sbjct 113956 ATGAAGGTGTCTGCTAGACCCTGAACTCCAATGCCAATAGGTCTATGTCGAAAATTTGAC 114015 Query 77553 ATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT---TCTA 77609 |||| || | | || ||| || ||||||| || || ||||| || ||||| || Sbjct 114016 CTTTTTGCATTTTCAACAGGGTAGTAATTAACATCAATGATTTTGTTAAGATTAGAGGTA 114075 Query 77610 ACAACTACTTTAACC 77624 || ||| || ||||| Sbjct 114076 ACTACTCCTGTAACC 114090 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 77493 ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 77552 || |||| ||||||| |||||||||||||| |||||||||||||||| ||| || Sbjct 114874 ATGAAGGTGTCTGCTAGACCCTGAACTCCAATGCCAATAGGTCTATGTCGAAAATTTGAC 114933 Query 77553 ATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT---TCTA 77609 |||| || | | || ||| || ||||||| || || ||||| || ||||| || Sbjct 114934 CTTTTTGCATTTTCAACAGGGTAGTAATTAACATCAATGATTTTGTTAAGATTAGAGGTA 114993 Query 77610 ACAACTACTTTAACC 77624 || ||| || ||||| Sbjct 114994 ACTACTCCTGTAACC 115008 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | || || |||||||| || |||||| || ||| | | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 78459 TATGTTTCAATAGCTGATTCTATGTC--CCATTGATGAATTCCTACCGCTACACGCATCA 78516 || |||| ||| | || || || || |||| |||||||| || || || | ||||| Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCATG--TGAATTCCAACAGCAACTCTCATCA 116932 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| ||||||||||| || || ||| | | ||| || | || || ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | || || || ||||| || | || |||||| | || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 >seq79 Length=2571107 Score = 105 bits (116), Expect = 9e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || | ||||| |||| |||||| Sbjct 116400 CCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACCA 116459 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| |||||| | ||| | || |||||||| ||| || Sbjct 116460 TTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGAG 116519 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| | || || | | || | ||| || ||||| ||||| || || Sbjct 116520 ACGCCAATTCCTCCAG-CAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq320 Length=1281786 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||||| ||||||||| |||| |||| || || |||||| ||||| | ||| || Sbjct 81241 TTCAAATTTTTCTCCCCAACAATCAGCCAAACCGGGAGCTTCATTGGGGCAAAACAAAGA 81300 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 |||| ||||| | |||| || ||||||||||||||| ||||| |||||| || Sbjct 81301 CCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAGAGAGCATAGAA 81360 Query 78044 TAGATCTCGGGTTCTATGTTCTTC 78067 || ||||| | || ||||||||| Sbjct 81361 TAAATCTCTTGCTCGATGTTCTTC 81384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694604091601280