Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1752 210 3e-49 seq755 138 2e-27 seq79 134 2e-26 seq320 114 2e-20 seq219 89.7 7e-13 >seq1752 Length=70440 Score = 210 bits (232), Expect = 3e-49 Identities = 381/555 (69%), Gaps = 2/555 (0%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| || || ||||| || | ||| ||||||| || || ||||| || ||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745 | || ||||| | |||||||| || ||||||||||| || || |||| | |||||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||||| || || ||| || || |||| || ||||| | || | | | || Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAGTCTCCGAACCATC 24707 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||||| | ||||| ||||| ||||| |||||||| | || || || |||| Sbjct 24708 GATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGCATG 24767 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||| | || || || | |||||||| ||| || || | |||||||| ||||| Sbjct 24768 AAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTACAT 24827 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 || ||||| || ||||||||||| || || ||||| || ||| | || |||| || Sbjct 24828 CTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGCAAC 24887 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||| || || | ||| ||| ||| | || || || || ||||| || || Sbjct 24888 CTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGCGGC 24947 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||| ||||| | ||||| | | ||| | |||||||||| || || | ||||| Sbjct 24948 AAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCAGTG 25007 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 || ||||| || | ||| || || ||||| ||||| || || ||||| ||||| || Sbjct 25008 GCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTTCTT 25067 Query 47166 ATACATATTCCATAT 47180 |||||| | ||| || Sbjct 25068 ATACATTTCCCAGAT 25082 >seq755 Length=570705 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | ||||| |||| |||||| Sbjct 116406 CCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCCA 116465 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| ||||||||| ||| ||||||||||| || || Sbjct 116466 TTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGAG 116525 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| |||| ||| | |||||| ||||| || ||||| ||| Sbjct 116526 ACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATATG 116585 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 116586 CCTTCAATACTATCATCTTTCATG 116609 Score = 102 bits (112), Expect = 1e-16 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | || || |||||||||||||||||| || ||| | | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 77054 TATGTTTCAATAACTGCTTCTATATC--CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || |||| ||||| | || ||||| |||| |||||||| ||||| || | ||||| Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCAT--GTGAATTCCAACAGCAACTCTCATCA 116932 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| |||||||||| ||||| ||| | | ||| || | || || ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | || || || ||||| || | || |||||| | || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 76097 TCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCT 76156 |||||||| |||||||||||||| |||||||||||||||| ||| || ||| || Sbjct 113965 TCTGCTAGACCCTGAACTCCAATGCCAATAGGTCTATGTCGAAAATTTGACCTTTTTGCA 114024 Query 76157 TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 | | || |||||| ||||||| ||| || ||||| || ||||| | ||||||| Sbjct 114025 TTTTCAACAGGGTAGTAATTAACATCAATGATTTTGTTAAGATTAGAGGTAACTACT 114081 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 76097 TCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCT 76156 |||||||| |||||||||||||| |||||||||||||||| ||| || ||| || Sbjct 114883 TCTGCTAGACCCTGAACTCCAATGCCAATAGGTCTATGTCGAAAATTTGACCTTTTTGCA 114942 Query 76157 TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 | | || |||||| ||||||| ||| || ||||| || ||||| | ||||||| Sbjct 114943 TTTTCAACAGGGTAGTAATTAACATCAATGATTTTGTTAAGATTAGAGGTAACTACT 114999 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| |||||||| || || || |||||||| || |||||| ||| |||||| Sbjct 115748 CTCTCTCTCATATTGGGTGTACAATTTCTCAAATTCTTCACCCCAACAATCCGACAAACC 115807 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| ||||| || || | |||||||| | |||| | | || ||| | || ||||| Sbjct 115808 TGGAGCCTCATTAGGGCAAAATAATGACCATTGCCCAT-TACTTTGAACTCTTTCCATAA 115866 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||||| ||| || ||| |||| ||| || Sbjct 115867 AGAGATCAGGTACCCAAAGCGCATAGAATAAATCCCG 115903 >seq79 Length=2571107 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || | ||||| |||| ||| || Sbjct 116400 CCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACCA 116459 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||| | ||| ||||||||||| |||||| Sbjct 116460 TTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGAG 116519 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||| |||||||| || ||| ||| | |||||| ||||| || ||||| ||| Sbjct 116520 ACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATATG 116579 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 116580 CCTTCAATACTATCATCTTTCATG 116603 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| || || ||||||||| | ||| | | || Sbjct 116813 GTTCCAGCATTGAAAAGGGTGGGAGAAGCGTGTGTGAACCATCGCTGAGACATCAAATGA 116872 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || ||||||||||| | || ||||| | ||| |||||||| ||||| || | ||| | Sbjct 116873 TAGGTTTCAATAACCGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATTAG 116931 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||||| || ||| ||| | | ||| || | ||| || |||||| Sbjct 116932 CATGTGCTGAGGTCTCTCCACAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 116991 Query 77173 AGTTTTAAAACCAAAATA 77190 || ||||| ||||| || Sbjct 116992 GGTCTTAAAGCCAAAGTA 117009 >seq320 Length=1281786 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 76775 GCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCA 76834 ||||||| |||| | ||||| | ||| ||||||||||| || || | |||||| | ||| Sbjct 81830 GCAGTGTCATTAAACACTCTAAGCATAGGAATAATGCCATTGGAACTCCCATTTATCCCA 81889 Query 76835 GAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATT 76894 ||| ||||| || |||||||||||| | ||| || || |||||||| || | Sbjct 81890 CGAATGTAACTGCCTGCAGCACGAATATTATGCACAGAAAGACCAATTCCTCCAGCTAGC 81949 Query 76895 TTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATC 76954 || || | |||||| ||||| || ||| | |||||||| || |||||||| || Sbjct 81950 TTGCTAATAACAGCACACTCCTTCAAAGTATCAAATATGCCCTCAATGCTATCATCTTTC 82009 Query 76955 ATGTTAAGAAGAAAACAGCTA 76975 ||| | |||||| |||||| Sbjct 82010 ATGCACACAAGAAAGCAGCTA 82030 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||| ||||||||| |||| ||||||| ||| |||||| || || | ||| || Sbjct 81241 TTCAAATTTTTCTCCCCAACAATCAGCCAAACCGGGAGCTTCATTGGGGCAAAACAAAGA 81300 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| ||||| | || | || ||||||||||||||| ||||| |||||| || Sbjct 81301 CCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAGAGAGCATAGAA 81360 Query 76639 TAGATCTCGGGTTCTACGTTCTTC 76662 || ||||| | || | ||||||| Sbjct 81361 TAAATCTCTTGCTCGATGTTCTTC 81384 >seq219 Length=1577337 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| ||||||| |||| |||||| | ||| ||||||||||| Sbjct 925330 CCTCCTTGATCAACATAGTGAGCAGTGTCATTAAAAACTCATAGCATAGGAATAATGCCA 925271 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || |||||||| ||| ||||||||||| | | |||||||| | ||| Sbjct 925270 TTGGAATGCCCATTTGTCCCACTGATATAACTTCCTGTAGAATGAATATTATATACAGAA 925211 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || |||||||| || | || || | |||||| ||| | || ||| | ||| Sbjct 925210 AGACCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTTCTTCCAAGTATCAAATATG 925151 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || |||| || ||||| | ||||||| |||| Sbjct 925150 TCCTTGATGCTATAATATTTCATGCACACAAGAAAAATGCTA 925109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712867990160640