Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1752 134 1e-26 >seq1752 Length=70440 Score = 134 bits (148), Expect = 1e-26 Identities = 375/566 (66%), Gaps = 21/566 (4%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| || || ||||| || | ||| ||||| | ||||| || || || |||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAA 23624 ||||| ||||| || || || || || | ||||||||| || ||||| | | || ||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC-CAAATGTTGCATTATAAT 23683 || || ||||| ||| ||||| || | || | | | | |||| || | | || Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCC-TCTCCGCAAAAGTCTCCGAACCAT 24706 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTG----TTTCA 23739 | ||||| | | ||| | ||| || |||| ||| ||| | | ||| Sbjct 24707 CG---ATCCACCTGAGGGCCCACTCAGCTTT----TTTAGCCACACAAGGGACAGTCTCA 24759 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGT 23796 ||||| | || | | | || |||| | || |||| | ||||| || || | | Sbjct 24760 ATTGCATGAAACA--AGCGATTCTTCT-CGTTGGAATCTTTAATATAAGTCTCCAACAAA 24816 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | ||| ||||| || ||||| |||||||||||||| || || || ||||| ||| | | Sbjct 24817 AGACTGTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGA 24876 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 || |||| | || || || || | ||| | | ||| | |||||| ||| |||||| Sbjct 24877 GCCTCAGCAACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCA 24936 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAAT 23976 || || |||||||| |||||||||| | | ||| || ||||||| | || || Sbjct 24937 TCGGAGGCGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGG 24996 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 || ||| | | ||||| || | ||| || || ||| | |||||||| ||| Sbjct 24997 GCTTCCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCC 25056 Query 24037 AAGGCACGCTTATACATTAGCCAAAT 24062 ||| |||||||||| ||| || Sbjct 25057 TCGGCTTTCTTATACATTTCCCAGAT 25082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521439423392800