Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9751 127 2e-24 seq10024 118 1e-21 >seq9751 Length=50749 Score = 127 bits (140), Expect = 2e-24 Identities = 311/459 (68%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGA 17013 ||| || || |||||||| || || | |||||||||| || |||| | ||||| || Sbjct 49326 ACAACAAGCAAGCGAAATCACAGTGGAGACCCTCGTCTC-GC-GATATTAACTCGTTTGA 49269 Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCC 17073 || || || |||||||| || || || || ||||| ||||| ||| ||| || Sbjct 49268 GAAAGTTAATCCGGGCATTAAACCGCGCTTTTTCAACCAGAATATGGCGCAGAAACTTCC 49209 Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC 17133 || || || || ||||||||| | ||||| ||||| || || |||||| | || | | Sbjct 49208 GGAGAAAAAGATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGTTTCTCC 49149 Query 17134 TTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 | ||| ||||||||| |||||||||| |||| | || || |||||| Sbjct 49148 TCCGTTG---ATCCATTTCATGGCCCACTCGGCCTTTTTAGCCACACACGGCACCGTTTC 49092 Query 17194 TATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 ||||| || | | ||||||| | || || | || || || || | || | Sbjct 49091 AATGGCGCGGAAGAGTCGGCTCTTTTCATCGGAG-TCCTTGATGTAGGTCTCCAAAAGGA 49033 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGG 17311 | |||||||| || |||||||| ||||| || || || || || ||||| ||||| || Sbjct 49032 GACTGTACATCTCAGAGTGTATATTCTCAATAGCGATTTGGAAACCGTAGAAAGCC-CGC 48974 Query 17312 GCTTCCGCTATTTGAACTTCCA-CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 || || | ||||| || || | || || || | || || ||||| ||||| || Sbjct 48973 GCCTCGGAGATTTGGACCTCTTTCATA-AACCGAACGGCGAGGTTTTCAAGGACGATTCC 48915 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||| ||||||||||| || | | ||| | ||||| Sbjct 48914 GTCGGAGGCGGCGAAAAAGGCAAGAACATGAGTGATGAA 48876 >seq10024 Length=53621 Score = 118 bits (130), Expect = 1e-21 Identities = 470/725 (65%), Gaps = 21/725 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||| | ||| ||||| || || ||||| || | | || || ||| Sbjct 15285 TGGTACTCACCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAGTTCC 15226 Query 16736 ATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 || |||| ||||| || | | || |||| ||| |||||| | | | | | Sbjct 15225 ATCCAATCGAAAGGGTTTACAACATTGTAAAT--TTTCCCGTACCCTAACGCTCCCAACA 15168 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | | ||||||||| || || || || || | ||| || |||| ||| || |||| | || Sbjct 15167 ACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCTGTTAATCCCTACTA-AC 15109 Query 16854 GTACCGG-AAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC-CTTAATAAT 16911 | || || |||||| || || ||| | |||||| |||| || || |||| || Sbjct 15108 GCACAGGGAAGAGCGTCGCACACAAACTCTCTCTCTATGTCAACGGCCTCTCTTACTATC 15049 Query 16912 ACTAGCAACTCGTTCCTCGGACGG---TGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 | || | || || ||| | | || | |||| | ||| || || || Sbjct 15048 CCCTTCA-CGCGCTCTTCGCTCAGCTTTGACCGGAGGAGATCGT---ACAGCAAGCAAGC 14993 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 |||||||| || | || || |||| ||| | || || || || || || || || Sbjct 14992 AAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTTAATCCAGG 14933 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| || || || || ||||||||||| ||| ||| ||||| || ||||| || Sbjct 14932 CATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAAAATATCCC 14873 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| | | | ||||| ||||| || || |||||| | || | | ||| ||||| Sbjct 14872 CTCAATGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCCGCCGTT---GATCCA 14816 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAAATA 17207 |||| ||||||||||||||| | ||| || |||||| ||||| | || Sbjct 14815 TTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGCACGGAAGAG 14756 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 ||| ||||||| || | || || || |||| || || |||||||| |||| Sbjct 14755 GCGGCTC-TTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACTGTACATCTCGG 14697 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGA 17326 |||| || || || ||||| ||||| || || || |||||| || || || | ||||| Sbjct 14696 AGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCGGAGATTTGG 14638 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 || || ||| || | || |||||||| ||||| || ||| || || ||| Sbjct 14637 ACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCGGAGGCAGCAAAA 14578 Query 17387 AACGC 17391 || || Sbjct 14577 AAGGC 14573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517044305331840