Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10024 134 1e-26 seq9751 104 2e-17 >seq10024 Length=53621 Score = 134 bits (148), Expect = 1e-26 Identities = 571/879 (65%), Gaps = 35/879 (4%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| |||| ||| | ||| |||||||| || ||||| || | || || || |||| Sbjct 15285 TGGTACTCACCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGAAATCAGTTCC 15226 Query 15974 ATAAAATC-AAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCA--GTTCCGTAACT 16030 || |||| |||||| ||| | | || || || |||||| | | ||| ||| Sbjct 15225 ATCCAATCGAAAGGGTTTACAACATTGTAA-ATTTTCCCGTACCCTAACGCTCCC-AAC- 15169 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA-TAAG 16089 || | ||| ||||| || || || || |||| ||| || |||| ||||| |||| ||| Sbjct 15168 AACCGATCCGCTACGAACTCGATGTACTGACTCATCAAATCGCTGTTAATCCCTACTAA- 15110 Query 16090 TCGTACCGG-AAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 || || || |||||| | | ||| | | ||||| |||| || ||| | | | Sbjct 15109 -CGCACAGGGAAGAGCGTCGCACACAAACTCTCTCTCTATGTCAACGGCCTCTCTTACTA 15051 Query 16149 TATCGGTGGCTCG-TGTT---TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 | | | | || | || |||| | || || ||| | | ||| | || Sbjct 15050 TCCCCTTCACGCGCTCTTCGCTCAG-CTTTGACCGG---AGGAGATCGTACAGCAAGCAA 14995 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || ||||| || || ||||| |||| ||| | || ||||| |||||||| || Sbjct 14994 GCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTTAATCCA 14935 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGAATA 16322 |||||| || || || || ||||| ||||| ||||| || | || || || |||| Sbjct 14934 GGCATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTT--CCAGAGAAAAATA 14877 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382 | ||||||| | ||||||||||| || || || ||| | || | | || | Sbjct 14876 TCCCCTCAATGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCCGCCGTT---GA 14820 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTTA 16441 |||||||| |||| |||||||||| | || || |||||| ||||| | | Sbjct 14819 TCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGCACGGA 14760 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 | ||| ||||||| ||| | || || || || | || | ||||||||| Sbjct 14759 AGAGGCGGCTC-TTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACTGTACATC 14701 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCTAT 16560 || ||||| || || || ||||| ||||| || |||||| ||||| || ||||| | || Sbjct 14700 TCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCGGAGAT 14642 Query 16561 TTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 ||| | ||| || | || || | || || || ||| |||||||| || || Sbjct 14641 TTGGACCTCTTTCATG---AACCGGACGGCAAGATTTTCAAGGACGATACCATCGGAGGC 14585 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||||||||| || | | ||| | ||||| | ||||| | || || | | ||| Sbjct 14584 AGCAAAAAAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTCCCA 14525 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | | ||| || | ||| ||||| || | |||||||| || | || || Sbjct 14524 GTGTGGGAGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCGGCTTT 14465 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 || ||||||| ||||| | |||||| || ||||| Sbjct 14464 CTTGTACATTTCCCAAACCTGTGGGTATTGGATCGGAAA 14426 >seq9751 Length=50749 Score = 104 bits (114), Expect = 2e-17 Identities = 288/433 (67%), Gaps = 13/433 (3%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTA 16259 || ||||| || || || || || ||||||| || |||| | ||||| || ||||||| Sbjct 49318 CAAGCGAAATCACAGTGGAGACCCTCGTCTC-GC-GATATTAACTCGTTTGAGAAAGTTA 49261 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAA 16317 | || |||||| || || || || ||||||||||| ||||| || | || || || Sbjct 49260 ATCCGGGCATTAAACCGCGCTTTTTCAACCAGAATATGGCGCAGAAACT--TCCGGAGAA 49203 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 || || ||||| || | ||||| ||||| || || || ||| | || | || || Sbjct 49202 AAAGATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGTTTCTCCTCCGTT 49143 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 ||||||||| |||| ||||| |||| | ||| || |||||| ||||| Sbjct 49142 ---GATCCATTTCATGGCCCACTCGGCCTTTTTAGCCACACACGGCACCGTTTCAATGGC 49086 Query 16438 CTTAAACAAT-TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | ||| ||||| | || | || || || || | || | ||||| Sbjct 49085 GCGGAAGAGTCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGTCTCCAAAAGGAGACTGT 49027 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 |||| || |||||||| ||||| || || || || || || ||||| || ||||| | Sbjct 49026 ACATCTCAGAGTGTATATTCTCAATAGCGATTTGGAAACCGTAGAAAGCCCGCGCCTCGG 48967 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 ||||| || || ||| || | || ||||| ||| ||||| ||||| | Sbjct 48966 AGATTTGGACCTCTTTCATAAACCGAACGGCGAGGTTTTCAAGGACGATTCCGTCGGAGG 48907 Query 16617 CAGCAAAAAACGC 16629 | || ||||| || Sbjct 48906 CGGCGAAAAAGGC 48894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510919044012160