Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq9733 109 5e-19 seq1278 109 5e-19 seq1833 107 2e-18 seq11709 104 2e-17 seq10 104 2e-17 seq3059 96.9 3e-15 seq3967 95.1 1e-14 seq433 95.1 1e-14 seq8977 91.5 1e-13 seq2335 84.2 2e-11 >seq9733 Length=51005 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || ||||||||||| || ||| | Sbjct 37197 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 37138 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || ||||| || ||| || |||||||| | ||| |||||| Sbjct 37137 GATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 37078 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || ||||| || ||||||||||||||| | ||| |||| ||||||||| Sbjct 37077 CAGAGGTTGATTTTTGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 37018 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| |||||||| |||||||| Sbjct 37017 ATTCAGAAGGAATCAACTCTTCA 36995 >seq1278 Length=225562 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| ||||| || ||||||||||| || ||| | Sbjct 157848 ATGCAGATCTTCGTCAAAACTTTGACCGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 157907 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || ||||| || ||| || |||||||| | ||| ||| || Sbjct 157908 GATACGATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGACCAG 157967 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || || || || ||||||||||||||| | ||| |||| ||||||||| Sbjct 157968 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 158027 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||||||||| ||||||||| | || || || Sbjct 158028 ATACAAAAGGAATCCACTCTTCACCTTGTCTTGCG 158062 >seq1833 Length=187927 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||||||| ||| ||| | Sbjct 43480 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATTACCCTGGAAGTGGAGAGTTCT 43421 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| || ||| || |||||||| | ||| |||||| Sbjct 43420 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 43361 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || || || || ||||||||||||||| | ||| | || ||||||||| Sbjct 43360 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 43301 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || || |||||||| ||||||||| Sbjct 43300 ATCCAGAAGGAATCCACTCTTCAC 43277 >seq11709 Length=37133 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||||||| || ||| | | Sbjct 7746 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACCCTGGAGGTGGAGAGCTCT 7687 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| || ||| || |||||||| | ||| |||||| Sbjct 7686 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 7627 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || || || || ||||||||||||||| | ||| | || ||||||||| Sbjct 7626 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 7567 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||| ||||||||| | || || || Sbjct 7566 ATCCAGAAGGAATCCACTCTTCACCTTGTCTTGCG 7532 >seq10 Length=577822 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || |||||||| |||||||| || ||| || |||| | Sbjct 562177 AATGCAGATCTTTGTGAAGACATTGACCGGCAAAACAATCACCTTGGAGGTGGAAAGTTC 562118 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || ||| | | || | ||| || ||| ||||| ||||| | ||| ||||| Sbjct 562117 GGATACGATAGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCTGATCA 562058 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| |||||||||||||| ||| | ||| | || ||||| || Sbjct 562057 GCAAAGGCTTATCTTTGCAGGCAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 561998 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||| || ||||| |||||| Sbjct 561997 CATTCAAAAAGAGTCTACCCTTCAC 561973 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| ||||| | || |||||||| |||||||| || ||| || |||| | Sbjct 542960 AATGCAGATATTTGTGAAGACATTGACCGGCAAAACAATCACCTTGGAGGTGGAAAGTTC 542901 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| ||||| ||||| | ||| ||||| Sbjct 542900 TGATACAATAGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCTGATCA 542841 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| |||||||||||||| ||| | ||| | || ||||| || Sbjct 542840 GCAAAGGCTTATCTTTGCAGGCAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 542781 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| |||||| Sbjct 542780 CATTCAGAAAGAGTCTACCCTTCAC 542756 >seq3059 Length=143113 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| ||||||| |||||||| ||||| |||||| ||| ||| | | Sbjct 1976 ATGCAGATATTTGTCAAAACCTTGACGGGAAAAACAATTACCCTCGAGGTGGAGAGCTCG 1917 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | ||| |||||| ||||||||||| | || |||||| Sbjct 1916 GATACGATCGACAACGTGAAGGCTAAAATTCAGGATAAAGAAGGGATCCCTCCGGATCAA 1857 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | ||||| || ||||| || |||| || || || | || ||||||||| Sbjct 1856 CAGAGGTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTGCAGATTACAAT 1797 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || || || |||||||| ||| | ||| | | | || |||||| Sbjct 1796 ATCCAGAAAGAGTCTACTCTCCACCTTGTGCTGAGGCTTCGTGGAGGG 1749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| | ||||| |||| ||||| || || || ||| ||| | | Sbjct 2204 ATGCAGATATTCGTGAAAACCCTGACCGGCAAGACTATCACTCTTGAAGTCGAAAGCTCC 2145 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| ||||||||||| | || ||||| Sbjct 2144 GACACCATAGATAATGTCAAAGCTAAGATTCAAGATAAAGAAGGCATCCCTCCGGATCAG 2085 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| ||||||||| |||| ||| || |||||||||||||| Sbjct 2084 CAGCGATTGATCTTTGCCGGCAAACAACTGGAGGATGGTCGCACCTTGGCCGATTACAAT 2025 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || ||||||||||| ||||| || |||| Sbjct 2024 ATCCAAAAGGAATCGACTCTCCATCTGGT 1996 >seq3967 Length=121343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || ||||||||||| || ||| | Sbjct 66461 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACTCTGGAGGTGGAGAGTTCT 66520 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||| || ||| || || ||||| | ||| |||||| Sbjct 66521 GATACGATAGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCCCCAGATCAG 66580 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || || || || ||||||||||||||| | ||| |||| ||||||||| Sbjct 66581 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 66640 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||||||||||||| | || || || Sbjct 66641 ATCCAGAAGGAATCTACTCTTCACCTTGTCTTGCG 66675 >seq433 Length=331005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||| ||| || ||| | Sbjct 36821 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATAACCCTAGAGGTGGAGAGTTCT 36880 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| || ||| || |||||||| | ||| |||||| Sbjct 36881 GATACGATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAG 36940 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || || || || ||||||||||||||| | ||| | || ||||||||| Sbjct 36941 CAGAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTTGCTGATTACAAT 37000 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||| ||||||||| | || || || Sbjct 37001 ATCCAGAAGGAATCCACTCTTCACCTTGTCTTGCG 37035 >seq8977 Length=60439 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || |||||||| | || ||||||||||||| | || ||||| || ||| Sbjct 30047 AAAATTCAGGACAAAGAAGGAATCCCACCAGATCAACAAAGATTGATTTTTGCAGGAAAA 29988 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 || | |||||| | |||| |||||||||| ||||| |||||||| ||||| || || Sbjct 29987 CAGCTTGAAGATGGAAGAACTCTGGCCGATTATAATATCCAAAAGGAGTCTACCCTCCAT 29928 Query 25239 ATGGT 25243 |||| Sbjct 29927 TTGGT 29923 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||||| ||||| ||||| || ||||| |||||||| | || | || ||| Sbjct 30241 GATCAGCAAAGGCTTATTTTTGCTGGAAAACAGCTGGAAGATGGCCGTACCCTAGCTGAT 30182 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGG 25258 ||||| ||||||||||||||||| || ||| | ||| | || | ||||| Sbjct 30181 TACAACATTCAAAAGGAATCTACCCTCCACCTAGTGCTCCGCCTTCGAGG 30132 >seq2335 Length=171082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| || ||||| ||||| ||| ||| | | Sbjct 23448 ATGCAGATTTTTGTAAAGACTTTGACTGGGAAAACGATTACTTTGGAAGTTGAAAGCTCG 23507 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| || ||| || || ||||| | || ||||| Sbjct 23508 GATACGATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGATCAG 23567 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || ||||||||||||||| || ||| |||| ||||| ||| Sbjct 23568 CAGAGGCTCATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTTTGGCTGATTATAAT 23627 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || || || |||||| Sbjct 23628 ATTCAGAAAGAGTCCACCCTTCAC 23651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410408849664032