Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3405 113 7e-20 seq14711 111 2e-19 seq8977 104 3e-17 seq8707 98.7 1e-15 seq1833 96.9 5e-15 seq9733 95.1 2e-14 seq7474 95.1 2e-14 seq1395 95.1 2e-14 seq33128 89.7 8e-13 seq10551 89.7 8e-13 seq4679 89.7 8e-13 seq1260 89.7 8e-13 seq729 89.7 8e-13 seq9725 86.0 9e-12 seq8995 86.0 9e-12 seq3410 86.0 9e-12 seq3059 86.0 9e-12 seq2716 86.0 9e-12 seq267 86.0 9e-12 seq2478 84.2 3e-11 >seq3405 Length=133844 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||||||| | ||| ||||| || || ||||||||| Sbjct 81588 GTTCCTCCCCTAAGCCTCAAAACCAAATGAAGAGTCGATTCCTTCTGGATGTTATAATCT 81529 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || | ||||| || |||||||||||||| |||||||| ||| Sbjct 81528 GCAAGAGTTCGACCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGCTGATCAGGA 81469 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || |||| ||| || || || Sbjct 81468 GGTATTCTTTCCTTGTCCTG 81449 >seq14711 Length=21231 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||| || || ||||||||||| | ||||||||| | ||| || Sbjct 5049 ACCAAATGGAGAGTAGACTCCTTTTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 4990 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||| ||||||||||||||||| || || || |||||||||||||| || || Sbjct 4989 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCCTG 4931 >seq8977 Length=60439 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||||| || || ||||||||||| | Sbjct 29905 CCACCACGAAGGCGGAGAACCAAATGGAGGGTAGACTCCTTTTGGATATTATAATCGGCC 29964 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | |||||||| ||||||||||||||||| ||||| || || Sbjct 29965 AGAGTTCTTCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTTTGTTGATCTGGTGGG 30024 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 30025 ATTCCTTCTTTGTCCTG 30041 >seq8707 Length=59147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || ||||| || || ||||| || | || ||||| || | ||||||||| Sbjct 8462 GTCCCTCCCCTAAGCCTCAAAACCAAGTGAAGTGTCGATTCCTTT----TGTTATAATCT 8407 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| ||||| || | ||||| ||||||||||||||||| |||||| | || Sbjct 8406 GCAAGAGTTCGACTATCTTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGACCAAGA 8347 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || |||||||| || || || Sbjct 8346 GGTATTCCTTCCTTGTCCTG 8327 >seq1833 Length=187927 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| ||||| || ||||| ||||| | |||||| || | ||| || |||||||| || Sbjct 43283 AGTGGATTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCATCTTCCAATTGTTTCCC 43342 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||| ||||||||||| || ||||| |||||||| || || Sbjct 43343 AGCGAAAATCAACCTTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTG 43390 >seq9733 Length=51005 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | ||| | ||| ||||| || ||||| ||||| | Sbjct 36971 CCACCACGAAGACGCAAGACAAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCAGCC 37030 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | ||| || |||||||| |||||||||||||| || |||||||| || ||| Sbjct 37031 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGGGGA 37090 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 37091 ATCCCTTCTTTGTCCTG 37107 >seq7474 Length=135391 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | |||||| || || || |||||||| | | Sbjct 126904 CCACCACGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTTTGGATGTTATAATCGGCA 126845 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | |||||||| ||||||||||||||||| || || | | Sbjct 126844 AGAGTTCTTCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGATGAG 126785 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 126784 ATTCCTTCTTTGTCCTG 126768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | || | ||| | ||| || || || ||| || ||||||| | Sbjct 127588 CCACCGCGAAGGCGAAGGACAAGATGCAGAGTGGACTCCTTCTGTATGTTGTAATCTGCA 127529 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | || ||||||||||||||||| || |||||||| || || Sbjct 127528 AGAGTTCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGG 127469 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 127468 ATTCCTTCCTTGTCTTG 127452 >seq1395 Length=300421 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | ||| || || || || |||||||| Sbjct 217750 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 217691 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| || | ||| || |||||||||||||| || |||||||| ||| Sbjct 217690 GCCAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 217631 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||||||||| Sbjct 217630 GGGATACCTTCTTTATC 217614 >seq33128 Length=1038 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | ||| || || || || |||||||| Sbjct 538 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 479 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| |||| ||| || |||||||||||||| | |||||||| ||| Sbjct 478 GCTAGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACTTCTGCTGATCAGGA 419 Query 146168 GGAATTCCTTCTTTATC 146184 | || ||||||||||| Sbjct 418 TGGATACCTTCTTTATC 402 >seq10551 Length=45279 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || |||||||| | || ||||| || | ||| || || ||| || || |||||||| | Sbjct 35495 CCTCCTCTAAGGCGCAAAACCAAGTGCAGAGTTGACTCCTTTTGA-ATGTTATAATCGGC 35437 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| || | ||| || | || ||||||||||||||||| || ||||| || || || Sbjct 35436 AAGAGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGG 35377 Query 146170 AATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 35376 TATGCCCTCCTTATCCTG 35359 >seq4679 Length=107372 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| | ||||| || ||||| ||||| || || || || |||| | Sbjct 37121 CCACCACGGAGTCGAAGGACCAAGTGCAAAGTTGATTCCTTCTGGATGTTGTAGTCTGCA 37180 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | ||| || |||||||| ||||| || ||||||||||| || Sbjct 37181 AGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGG 37240 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 37241 ATTCCTTCCTTATCCTG 37257 >seq1260 Length=223926 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| | ||||| || ||||| ||||| || || || || |||| | Sbjct 117167 CCACCACGGAGTCGAAGGACCAAGTGCAAAGTTGATTCCTTCTGGATGTTGTAGTCTGCA 117108 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | ||| || |||||||| ||||| || ||||||||||| || Sbjct 117107 AGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGG 117048 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 117047 ATTCCTTCCTTATCCTG 117031 >seq729 Length=279696 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | ||| || || || || |||||||| Sbjct 139908 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 139849 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || |||| || ||| || | ||| || |||||||| ||||| || ||||| || ||| Sbjct 139848 GATAGTGTTCGGCCATCTTCCAGTTGCTTACCAGCAAATATCAACCTCTGCTGGTCAGGA 139789 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||||||||| Sbjct 139788 GGGATGCCTTCTTTATC 139772 >seq9725 Length=50919 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | ||| || || || || |||||||| Sbjct 37587 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 37528 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| || | ||| || |||||||| ||||| || ||||| || ||| Sbjct 37527 GCTAGCGTTCGGCCATCTTCCAGTTGCTTACCAGCAAATATCAACCTCTGCTGGTCAGGA 37468 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 37467 GGGATGCCTTCTTTATCCTG 37448 >seq8995 Length=56531 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| || | |||| ||| | ||| ||||| || ||||| ||||| | Sbjct 47866 CCGCCACGAAGCCTGAGGACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCC 47807 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | ||||||||| || || ||||||| ||||||||| |||| Sbjct 47806 AAGGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCTGAGGG 47747 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 47746 ATGCCTTCTTTATCTTG 47730 >seq3410 Length=189534 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| | ||||| || ||||| ||||| || || || || |||| Sbjct 154861 CCACCACGGAGTCGAAGGACCAAGTGCAAAGTTGATTCCTTCTGGATGTTGTAGTCTGCC 154920 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || || |||||||| ||||| || ||||||||||| ||| Sbjct 154921 AGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGA 154980 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 154981 ATTCCTTCCTTATCCTG 154997 >seq3059 Length=143113 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| || | |||| ||| | ||| ||||| || ||||| ||||| | Sbjct 1978 CCGCCACGAAGCCTGAGGACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCGGCC 2037 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | |||||| || ||||| ||||||| |||||||||||||| Sbjct 2038 AAGGTGCGACCATCCTCCAGTTGTTTGCCGGCAAAGATCAATCGCTGCTGATCCGGAGGG 2097 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 2098 ATGCCTTCTTTATCTTG 2114 >seq2716 Length=160079 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | ||| || || || || | |||||| Sbjct 9139 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGAGTGGACTCCTTTTGGATGTCATAATCA 9198 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| || | ||| || |||||||||||||| || ||||| || ||| Sbjct 9199 GCTAGTGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 9258 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||||||||| Sbjct 9259 GGGATGCCTTCTTTATC 9275 >seq267 Length=397383 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | ||| || || || || |||||||| Sbjct 218948 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 219007 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| | ||| || | ||| || || ||||||||||| || |||||||| ||| Sbjct 219008 GCTAGGGTTCGACCATCTTCCAGTTGCTTACCCGCAAAAATCAACCTCTGCTGATCAGGA 219067 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||||||||| Sbjct 219068 GGGATACCTTCTTTATC 219084 >seq2478 Length=159706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | || | ||||| || | || ||||| || || ||||| || | Sbjct 146181 TTCCACCTCTTAATCGAAGGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTATAGTCAG 146240 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||| | || ||| || || ||||| |||||||| ||||| || || || || || | Sbjct 146241 CCAGAGTACGGCCATCCTCCAACTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGTG 146300 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 146301 GGATTCCTTCTTTGTCTTG 146319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742806220328960