Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1319 82.4 6e-11 seq741 82.4 6e-11 >seq1319 Length=217872 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || ||||| || ||| ||||| || || ||||||||||| || || ||| ||| Sbjct 164643 CAGTTCTACGTAGCAAATGGGGAATTATCATGCCAAATGTATCAGCGCTCTTGTGACATG 164584 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || || ||| |||||| || || |||| |||||||| ||| Sbjct 164583 GGCTTGGGTGTGCCATTTAACATCGCATCTTATGCTCTCCTAACGTGCATGATTGCTCAT 164524 Query 20551 GTT 20553 ||| Sbjct 164523 GTT 164521 >seq741 Length=430468 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || ||||| || ||| ||||| || || ||||||||||| || || ||| ||| Sbjct 172512 CAGTTCTACGTAGCAAATGGGGAATTATCATGCCAAATGTATCAGCGTTCTTGTGACATG 172571 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| ||||| || || |||| |||||||| ||| Sbjct 172572 GGCTTGGGTGTGCCATTTAACATTGCATCGTATGCTCTCCTAACGTGCATGATTGCTCAT 172631 Query 20551 GTT 20553 ||| Sbjct 172632 GTT 172634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398807016618160