Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2034 96.9 7e-15 seq1617 93.3 9e-14 >seq2034 Length=191459 Score = 96.9 bits (106), Expect = 7e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| |||||||| || |||| || ||||| || ||| || Sbjct 144846 GACTTTGATTATGATTACTTTGGCTTCAAAACTCTTGAGAGGTCCTATCTTCTGAAAGTT 144787 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||||||||||||| |||| ||||| || ||||| Sbjct 144786 CAGGGGAAGGTTATAGAAAGGCCTCAGCACATGTTGATGAGAGTTGCTGTTGGAATTCAT 144727 Query 248929 AAGGATGACAT 248939 ||||||||||| Sbjct 144726 AAGGATGACAT 144716 >seq1617 Length=204607 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| |||||||| || |||| || |||||||| ||| || Sbjct 198000 GACTTTGACTATGATTACTTTGGCTTCAAAACTCTTGAGAGGTCCTATCTCCTGAAAGTT 197941 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | ||| | |||||||||||| ||| | || ||||| || |||||| Sbjct 197940 CAAGGGAAGGCTATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCAC 197881 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 197880 AAGGATGACATTGA 197867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072700348611584