Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq10551 98.7 8e-16 seq7474 96.9 3e-15 seq14711 95.1 9e-15 seq4679 95.1 9e-15 seq3410 95.1 9e-15 seq1260 95.1 9e-15 seq14362 89.7 4e-13 seq9927 89.7 4e-13 seq9733 89.7 4e-13 >seq10 Length=577822 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || |||||||||||||| || || || Sbjct 561950 CCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTTTGAATGTTATAATCAGCT 562009 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| |||||||||||||| ||| ||||||| ||||| ||||| ||| Sbjct 562010 AAAGTCCTCCCATCCTCCAATTGTTTGCCTGCAAAGATAAGCCTTTGCTGATCAGGGGGG 562069 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGG 18276 | ||||||||||| ||| | ||| || | | | || | ||| | || Sbjct 562070 ATTCCTTCCTTATCCTGAATCTTCGCCTTCACATTATCTATCGTAT--CCGAACTTTCCA 562127 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| |||||||||||||||| || ||||| || |||||| Sbjct 562128 CCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCACAAAGATCTGCATT 562177 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || ||||| |||||||| || || || Sbjct 542733 CCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCT 542792 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| |||||||||||||| ||| ||||||| ||||| ||||| ||| Sbjct 542793 AAAGTCCTCCCATCCTCCAATTGTTTGCCTGCAAAGATAAGCCTTTGCTGATCAGGGGGG 542852 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | ||| || | | | || ||| || Sbjct 542853 ATTCCTTCCTTATCCTGAATCTTCGCCTTCACATTATCTATTGTATCAGAACTTTCCACC 542912 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| |||||||||||||||| || ||||| || |||||| Sbjct 542913 TCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCACAAATATCTGCATT 542960 >seq10551 Length=45279 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| || Sbjct 35039 CCACCCCTAAGACGAAGGACAAGGTGGAGGGTTGATTCTTTCTGGATGTTGTAGTCAGCA 34980 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | |||||| |||||| |||| || || || ||||| || Sbjct 34979 AGGGTTCTGCCATCCTCAAGTTGTTTACCCGCAAAGATTAGCCTCTGCTGATCTGGTGGA 34920 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | |||||| | ||| ||||||| | ||| Sbjct 34919 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACC 34860 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | || || ||||| || ||||| Sbjct 34859 TCGAGGGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 34813 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||| ||||| ||||||||||| |||| || | |||| Sbjct 30018 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCT 29959 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || ||| | || | || || || || || | ||||||||||| Sbjct 29958 TCGAGTTGTTTACCGGCAAAAATCAACCTCTGCTGGTCTGGCGGGATACCTTCCTTATCT 29899 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||| | ||| || | ||||||| | Sbjct 29898 TGAATTTTAGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATGGTC 29839 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | ||| || |||||||| ||||| Sbjct 29838 TTCCCTGTGAGTGTCTTCACAAAAATCTGCAT 29807 >seq7474 Length=135391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||| || || || ||||| || ||||||||||| ||| Sbjct 126448 CCACCTCGAAGTCTAAGCACCAGGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCAGCC 126389 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| ||||| ||| | ||||| || ||||| || || Sbjct 126388 AGTGAGCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGTGGT 126329 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | | ||| || | ||| ||||| ||| Sbjct 126328 ATTCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCCACC 126269 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT-TTTTAAA 18332 |||| ||||||| | ||||| || | ||||| ||||| |||||||| | ||||| Sbjct 126268 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCATCTATTAAA 126214 >seq14711 Length=21231 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||| || || || ||||| || ||||||||||| ||| Sbjct 4611 CCACCTCGAAGTCTAAGCACCAGGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCAGCC 4552 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| ||||| ||| | ||||| || ||||| || || Sbjct 4551 AGTGAGCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGTGGT 4492 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | | ||| || | ||| ||||| ||| Sbjct 4491 ATTCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCCACC 4432 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| || | ||||| ||||| |||||||| Sbjct 4431 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 4385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||||||||| || ||||| || || ||||| |||| ||| | | |||||| Sbjct 5277 ACCAAGTGAAGTGTTGACTCCTTTTGGATATTATAGTCTGCCAATGTCCTTCCATCTTCA 5218 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | ||| ||||| ||| |||| |||||||| || || ||| | || ||||| || Sbjct 5217 AGTTGCTTGCCGGCAAAGATGAGTCTTTGCTGGTCTGGGGGAATACCCTCCTTGTC 5162 >seq4679 Length=107372 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||| | |||||||| || || ||||||||||| || Sbjct 37121 CCACCACGGAGTCGAAGGACCAAGTGCAAAGTTGATTCCTTCTGGATGTTGTAGTCTGCA 37180 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | ||| || || ||| |||| | || || |||||| ||| Sbjct 37181 AGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGG 37240 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| |||||| | ||| Sbjct 37241 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAATCGTGTCAGAGCTCTCAACC 37300 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || || | ||| || |||||||||||||| Sbjct 37301 TCCAGGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAAATTTGCAT 37347 >seq3410 Length=189534 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||| | |||||||| || || ||||||||||| ||| Sbjct 154861 CCACCACGGAGTCGAAGGACCAAGTGCAAAGTTGATTCCTTCTGGATGTTGTAGTCTGCC 154920 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | || || || ||| |||| | || || |||||| ||| Sbjct 154921 AGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGA 154980 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | |||||| | ||| ||||| | ||| Sbjct 154981 ATTCCTTCCTTATCCTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTCTCAACC 155040 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || || | || || |||||||||||||| Sbjct 155041 TCTAGGGTGATAGTTTTCCCAGTGAGGGTCTTCACAAAAATTTGCAT 155087 >seq1260 Length=223926 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||| | |||||||| || || ||||||||||| || Sbjct 117167 CCACCACGGAGTCGAAGGACCAAGTGCAAAGTTGATTCCTTCTGGATGTTGTAGTCTGCA 117108 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | ||| || || ||| |||| | || || |||||| ||| Sbjct 117107 AGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGG 117048 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| |||||| | ||| Sbjct 117047 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAATCGTGTCAGAGCTCTCAACC 116988 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || || | ||| || |||||||||||||| Sbjct 116987 TCCAGGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAAATTTGCAT 116941 >seq14362 Length=23126 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||| ||||| ||||||||||| |||| || | ||| Sbjct 16870 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCC 16929 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || ||| | || | ||| || || || ||| | || |||||||| Sbjct 16930 TCGAGTTGTTTACCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCCTCCTTATCT 16989 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| |||||| | ||| || | ||||||| | Sbjct 16990 TGAATTTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCAACCTCCAAGGTGATGGTC 17049 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | ||| || ||||| |||||||| Sbjct 17050 TTCCCAGTGAGTGTCTTCACAAAGATTTGCAT 17081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || ||||| || ||||||||||| ||| Sbjct 16627 CCACCACGGAGACGAAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCC 16686 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | |||||| || ||| | || | || || || || ||| Sbjct 16687 AAGGTGCGGCCATCCTCGAGTTGTTTACCGGCAAATATCAACCTCTGCTGGTCTGGGGGG 16746 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| ||||| |||||| | ||| |||||| | ||| Sbjct 16747 ATACCCTCCTTATCTTGAATTTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCAACC 16806 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || || | ||| || ||||| |||||||| Sbjct 16807 TCCAAGGTGATGGTCTTCCCAGTGAGTGTCTTCACAAAGATTTGCAT 16853 >seq9927 Length=49610 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || || || ||||| || ||||||||||| || Sbjct 13980 CCACCCCTGAGACGAAGGACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCAGCA 14039 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | |||||| |||||| ||||||| || || ||||| || Sbjct 14040 AGGGTTCTGCCATCCTCAAGTTGTTTACCCGCAAAGATAAGCCTCTGATGATCTGGTGGA 14099 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | ||| || | ||| ||||||| | ||| Sbjct 14100 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCCACC 14159 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | || |||||||| |||||||| Sbjct 14160 TCGAGGGTGATGATCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 14206 >seq9733 Length=51005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || | |||| ||||| || || || ||||| ||||||||||||||| Sbjct 37199 CCGCCACGAAGCCTCAAAACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 37258 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || || || | ||| || || || |||| || || || || ||| || Sbjct 37259 AAAGTTCGACCGTCCTCAAGTTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 37318 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| |||||| | | | ||||| | |||| | Sbjct 37319 ATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 37378 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| |||| ||||||| ||||| || || |||||||| Sbjct 37379 TCCAAGGTGATGGTTTTTCCGGTCAGGGTTTTCACGAAGATTTGCAT 37425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378985753216560