Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 4e-14 seq7474 87.8 2e-12 seq6053 84.2 2e-11 seq1659 82.4 6e-11 seq287 82.4 6e-11 >seq10 Length=577822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 ||||| || || || |||||||| ||||||||||| |||||| |||| ||||| ||| Sbjct 543187 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAAACCATAACCCTCGAGGTCGA---GAGT 543131 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||||||| |||||| | ||||||||| | || ||| Sbjct 543130 TCCGACACCATCGACAACGTTAAGGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGAC 543071 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGA 24986 |||||||| | || | || |||||||| |||||||| Sbjct 543070 CAGCAACGCCTCATCTTCGCCGGCAAACAGCTGGAAGA 543033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| ||||| |||||| | |||||||| || |||||| |||| ||||| ||| Sbjct 562404 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATAACCCTCGAGGTCGA---GAGT 562348 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | || |||| |||||| | ||||||||| | || ||| Sbjct 562347 TCCGACACCATCGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGCATCCCACCCGAC 562288 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGA 24986 |||||||| | || | || |||||||| |||||||| Sbjct 562287 CAGCAACGCCTCATCTTCGCCGGCAAACAGCTGGAAGA 562250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || || || ||||||||||| || ||| | || || ||| Sbjct 542959 ATGCAGATATTTGTGAAGACATTGACCGGCAAAACAATCACCTTGGAGGTGGAAAGTTCT 542900 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||| | ||| |||| || ||| | || ||||| | || ||| ||| Sbjct 542899 GATACAATAGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCTGATCAG 542840 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||||||| |||| ||| | |||| | ||||| | | Sbjct 542839 CAAAGGCTTATCTTTGCAGGCAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 542780 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAATTCGA 25071 || ||||||||| | || ||||| | || | || | || || || || | ||||||| Sbjct 542779 ATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGCCAGT-AATTCGA 542721 Query 25072 A 25072 | Sbjct 542720 A 542720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| ||||| |||||| | |||||||| || |||||| |||| ||||| ||| Sbjct 543415 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATAACCCTCGAGGTCGA---GAGT 543359 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | || |||| ||||| | ||||| ||| | || ||| Sbjct 543358 TCCGACACCATCGACAACGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCACCCGAC 543299 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||||| | || | || || ||||| ||||||||| | || || |||||| Sbjct 543298 CAGCAACGCCTCATCTTCGCCGGAAAACAGCTGGAAGATGGCCGTACCCTGGCGGATTAC 543239 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | ||| ||||| || | || || || || ||| | || | || || ||| Sbjct 543238 AACATCCAGAAGGAATCGACTCTCCACTTGGTGCTCCGTCTTCGTGGGGGT 543188 >seq7474 Length=135391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || ||||||||||| || || ||||| | || || ||| Sbjct 127362 ATGCAGATCTTTGTGAAGACCTTAACCGGGAAGACAATAACATTGGAGGTTGAAAGTTCA 127421 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | |||||||||||| ||| | || ||||| | || || ||| Sbjct 127422 GACACCATAGACAATGTTAAGGAAAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 127481 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | ||| || || || ||||| ||| | ||| | ||||||| | Sbjct 127482 CAGAGGTTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGAGAACTCTTGCAGATTACAAC 127541 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 |||||||| ||| |||| || ||| | || | || | ||||| ||| Sbjct 127542 ATACAGAAGGAGTCCACTCTGCATCTTGTCCTTCGCCTTCGCGGTGGT 127589 >seq6053 Length=86585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||||| ||||| ||||| || ||| | || || ||| Sbjct 18677 CATGCAGATCTTTGTTAAAACCTTGACCGGAAAAACAATTACCCTTGAGGTAGAAAGCTC 18736 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | || | ||| |||| ||||| | || ||||| | || ||||| Sbjct 18737 CGATACGATCGACAATGTGAAGGCGAAAATCCAGGATAAGGAAGGGATTCCTCCAGACCA 18796 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || | || || | || || || || ||||||||| || ||| | ||||||| Sbjct 18797 ACAGAGGTTGATTTTCGCAGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAA 18856 Query 25011 CATACAGAAAGAGGCCACGCTTCA 25034 |||||||||||| | |||||||| Sbjct 18857 TATACAGAAAGAGTCTACGCTTCA 18880 >seq1659 Length=198462 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || |||||| |||| || || || |||||| | || ||||| || | Sbjct 97918 ATGCAGATATTCGTCAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTCGAGTCTTCC 97859 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | |||||||| || ||| | ||||||||| | || ||||||| Sbjct 97858 GACACCATCGACAATGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCTGACCAG 97799 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| | || | || || || || || || || | || | ||| |||| | Sbjct 97798 CAACGCCTCATCTTCGCAGGGAAGCAGCTCGAGGACGGCCGCACCTTAGCCGACTACAAC 97739 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||| || |||| ||||| Sbjct 97738 ATCCAGAAGGAATCCACTCTTCA 97716 >seq287 Length=655510 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||| || || || |||||| | || || || || | Sbjct 103852 ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAGTCTTCC 103911 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| || ||| | ||||||||| | || |||||| Sbjct 103912 GACACCATCGACAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATCCCACCAGACCAG 103971 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || ||||| || || |||||| || | ||| |||| | Sbjct 103972 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGCACCTTAGCCGACTACAAC 104031 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||| ||| |||| ||||| Sbjct 104032 ATCCAGAAGGAGTCCACCCTTCA 104054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417908959976960