Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6613 87.8 4e-12 seq815 86.0 1e-11 seq7334 84.2 4e-11 >seq6613 Length=80294 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241 ||| ||||| |||| |||||| || |||||||| | | |||||| || || || Sbjct 47624 TGCAATAGATGCCAGATTGCAAACAGCAGTTTCTGTTGGACTTGTGTACTCGATTATCTC 47565 Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301 ||| ||||||||||||||||| ||| |||| | ||||| ||||| ||||||||| Sbjct 47564 AGTACACAAATTTGAAGACTTAATGTTGCCAAGATTTTGGTGGTTGATTTTTCTATTGCA 47505 Query 94302 GGTATCCT 94309 ||||||| Sbjct 47504 AGTATCCT 47497 >seq815 Length=266903 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 35463 CCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA- 35521 ||||||| |||||| | || ||||||| ||| | || | | | | | | |||| Sbjct 198483 CCGATTACACTGGACAAGGATTTGATCAGTTGTCGGATGTTATTGACAAGATTA-AGAAT 198541 Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 |||||| ||||||||||||| || | | || ||||||||| |||||| | || ||| Sbjct 198542 AATCCAAATGATAGAAGGATTATACTCTCAGCCTGGAATCCTTCGGATCTCAAACTGATG 198601 Query 35582 GCTCTTCCTCCATGCCACATGACTGCTCA 35610 || |||||||| ||||||||| |||||| Sbjct 198602 GCACTTCCTCCTTGCCACATGTTTGCTCA 198630 >seq7334 Length=105305 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 94166 TCACAAA-CTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCA 94224 ||||| | |||| | | ||| ||||| |||| |||||| || |||||||| | | Sbjct 96344 TCACATATCTTGGT-AGTGCAATAGATGCCAGATTGCAAACAGCAGTTTCTGTTGGACTT 96402 Query 94225 CTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGG 94284 |||||| | || ||||| ||||||||||||||||| ||| |||| | ||||| ||| Sbjct 96403 GTGTACTCAATTATCTCAGTACACAAATTTGAAGACTTAATGGTGCCAAGATTTTGCTGG 96462 Query 94285 TTAGACTTTCTATTGATGGTATCCT 94309 || ||||||||| ||||||| Sbjct 96463 TTGCTTTTTCTATTGCAAGTATCCT 96487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988601526161040