Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq9751 82.4 5e-11 >seq9751 Length=50749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 23009 TTGGTATGAATAGTGACAGTATGAGACTGTACATACAGTTTGTTGCAGATCGCCTGCTCG 23068 |||||||||| | || ||||| | |||||| |||| || || ||||| ||||| | Sbjct 49435 TTGGTATGAACGGCGATTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGCTGCTGG 49494 Query 23069 ATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAATCCATTTGATTTCATGGATAACA 23128 || |||| || | |||||||| || ||||| ||||||||||||| ||||| | Sbjct 49495 GCGCGTTGGGGTACGGGAAGATGTACAATGTTGCAAATCCATTTGATTGGATGGAACTGA 49554 Query 23129 TTAGCATTG-AAGGTAAAACAAACTTCTTTGAACGCCGTGTGAGTGAATATCAG 23181 || | ||| | || ||||| || ||||| || | ||| |||| |||||| Sbjct 49555 TT-TCGTTGCAGGGGAAAACTAATTTCTTCGAGAAGAGAGTGGGTGAGTATCAG 49607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355897178331664