Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12078 120 3e-22 seq10024 120 3e-22 >seq12078 Length=35335 Score = 120 bits (132), Expect = 3e-22 Identities = 389/592 (66%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || |||||||| || || ||||| ||||||| || | |||||||| || ||| Sbjct 4614 AAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCGTTTGAGAAAGTT 4555 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| |||||||| || || ||||| ||||||||||| || ||| || || || || Sbjct 4554 AATCCAGGCATCAACCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAACTTCCAGAGAA 4496 Query 13988 GAATATTCCCTCAACTGC-AGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 || || ||||||| ||| |||||| ||||| || || || | || | | || || Sbjct 4495 AAAGATCCCCTCAA-TGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGTTTCTCCGCCGT 4437 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | |||||||| ||||||| || | ||||| | | | ||||||| | Sbjct 4436 T---GATCCATTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAACGG 4380 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 || || | ||| || | | | | ||||| || || | || | || | Sbjct 4379 CACGGAAGAGGCGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGAGGAGCAGACTGT 4320 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCC 14225 |||| || ||||| || ||||| || || ||||| ||||| || |||||| | || || Sbjct 4319 ACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCG 4261 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 || ||| || || || | |||| | ||||||| || ||||||||| Sbjct 4260 GAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCATCAGAG 4201 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 ||||||||||| || | | || | || |||| |||| || | |||| ||| | Sbjct 4200 GCTGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGAGTTTCC 4141 Query 14346 CAAT--CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 || | ||| | ||| ||| | ||| ||||| || | |||||||| || | | Sbjct 4140 CAGTGACGG--AGATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGCTTCGG 4083 Query 14404 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 |||| || |||||| |||||| || | ||| || ||||| | |||||| Sbjct 4082 CTTTCTTGTACATTTCCCATACTTGTGGGTATTGGATCGGAAACA-TACAAA 4032 >seq10024 Length=53621 Score = 120 bits (132), Expect = 3e-22 Identities = 366/557 (66%), Gaps = 9/557 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || |||||||| || || ||||| ||||||| || | || || || || ||| Sbjct 15000 AAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTT 14941 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| ||||| || || || ||||| ||||||||||| || ||| || || || || Sbjct 14940 AATCCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAACTTCCAGAGAA 14882 Query 13988 GAATATTCCCTCAACTGC-AGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 ||||| ||||||| ||| |||||| || || || || || | || | | || || Sbjct 14881 AAATATCCCCTCAA-TGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCCGCCGT 14823 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | |||||||| ||||||| || | |||||| | | || |||||||| | Sbjct 14822 T---GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGG 14766 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 || || | ||| || | | | | ||||| || || | ||| | || | Sbjct 14765 CACGGAAGAGGCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACTGT 14706 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCC 14225 |||| || ||||| || ||||| || || ||||| |||||||| |||||| | || || Sbjct 14705 ACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCA-CGCGCCTCG 14647 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 || ||| || || || | |||| | ||||||| || |||||||| Sbjct 14646 GAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCGGAG 14587 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || |||||||| || | | || | | || |||| |||| || | |||| ||| | Sbjct 14586 GCAGCAAAAAAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTCC 14527 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 || | | | ||| ||| | ||| ||||| || | |||||||| || | ||| Sbjct 14526 CAGTGTGGGAGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCGGCT 14467 Query 14406 TTTTTATACATTACCCA 14422 || || |||||| |||| Sbjct 14466 TTCTTGTACATTTCCCA 14450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479263335459200