Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq12078 122 8e-23 seq10024 118 1e-21 >seq12078 Length=35335 Score = 122 bits (134), Expect = 8e-23 Identities = 385/590 (65%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || |||||||| || || ||||| ||||||| || | |||||||| || ||| Sbjct 4614 AAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCGTTTGAGAAAGTT 4555 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| |||||||| || || ||||| ||||||||||| || ||| ||| || || Sbjct 4554 AATCCAGGCATCAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAA 4495 Query 13777 AATATTCCCTCAACTGC-AGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 || || ||||||| ||| |||||| ||||| | || || | || | | || ||| Sbjct 4494 AAGATCCCCTCAA-TGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGTTTCTCCGCCGTT 4436 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 |||||||| ||||||| || | ||||| | | | ||||| | || Sbjct 4435 ---GATCCATTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAACGGC 4379 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | ||| | | ||| || | | | | ||||| || || | || | || || Sbjct 4378 ACGGAAGAGGCGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGAGGAGCAGACTGTA 4319 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||| || ||||| || ||||| || || ||||| ||||| || ||| | || || || Sbjct 4318 CATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCACGCGCCTCGGA 4259 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 ||| ||||| || | | || | |||||| |||||||||||| || Sbjct 4258 GATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCATCAGAGGC 4199 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14135 ||||||||| || | | || | || |||| |||| || | |||| ||| ||| Sbjct 4198 TGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGAGTTTCCCA 4139 Query 14136 AT--CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 | ||| | ||| ||| | ||| ||||| || | |||||||| || | ||| Sbjct 4138 GTGACGG--AGATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGCTTCGGCT 4081 Query 14194 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || || |||||| |||||| || | ||| || ||||| | |||||| Sbjct 4080 TTCTTGTACATTTCCCATACTTGTGGGTATTGGATCGGAAACA-TACAAA 4032 >seq10024 Length=53621 Score = 118 bits (130), Expect = 1e-21 Identities = 361/555 (65%), Gaps = 5/555 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || |||||||| || || ||||| ||||||| || | || || || || ||| Sbjct 15000 AAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGAAAGTT 14941 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || || ||||| ||||||||||| || ||| ||| || || Sbjct 14940 AATCCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGGCGCAGAAACTTCCAGAGAAA 14881 Query 13777 AATATTCCCTCAACTGC-AGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||| ||||||| ||| |||||| || || | || || | || | | || ||| Sbjct 14880 AATATCCCCTCAA-TGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCCGCCGTT 14822 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 |||||||| ||||||| || | |||||| | | || ||||| || || Sbjct 14821 ---GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAATGGC 14765 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | ||| | | ||| || | | | | ||||| || || | ||| | || || Sbjct 14764 ACGGAAGAGGCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACTGTA 14705 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||| || ||||| || ||||| || || ||||| |||||||| ||| | || || || Sbjct 14704 CATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCACGCGCCTCGGA 14645 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 ||| ||||| || | | || | |||||| || |||||||| || Sbjct 14644 GATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCGGAGGC 14585 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14135 |||||||| || | | || | | || |||| |||| || | |||| ||| ||| Sbjct 14584 AGCAAAAAAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTCCCA 14525 Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 | | | ||| ||| | ||| ||||| || | |||||||| || | ||||| Sbjct 14524 GTGTGGGAGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCGGCTTT 14465 Query 14196 TTTATACATTACCCA 14210 || |||||| |||| Sbjct 14464 CTTGTACATTTCCCA 14450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478125238888320