Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12078 163 4e-35 seq10024 154 2e-32 seq9751 147 3e-30 seq6788 125 1e-23 seq6613 96.9 5e-15 seq7334 89.7 7e-13 >seq12078 Length=35335 Score = 163 bits (180), Expect = 4e-35 Identities = 397/593 (67%), Gaps = 9/593 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || || ||||||||||| || || ||||||| ||||| ||||| || | Sbjct 4619 ACAGCAAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCGTTTGAGA 4560 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||| ||||| | || |||||||| | ||||||||| | |||| || |||| Sbjct 4559 AAGTTAATCCAGGCATCAACCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAACTTCCA 4501 Query 42176 GAAAAGAAGATTCCTTCTACTGCC-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 || || ||||| || || | ||| ||||| || || | | ||| | || | | Sbjct 4500 GAGAAAAAGATCCCCTCAA-TGCAAGCAAAAGCTATCAACCGCTCGGCGAAAGTTTCTCC 4442 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | | | ||||| || |||||| |||||||| || || || || | |||||| | Sbjct 4441 GCCGTTGATCCATTTCATAGCCCACTCGGCCTTTTTAGCCACGCACGGTACCGTTTCAAC 4382 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 |||| ||||| | ||||| | |||||| | || || |||| | ||||| Sbjct 4381 GGCACGGAAGAGGCGACTCTTTTCCTCGGAATCTTTGATGTAAGTCTCGAGGAGCAGACT 4322 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||| || || || || ||||||||||| ||||| || ||||||||| | ||||| Sbjct 4321 GTACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCGTAGAAAGCACGCGCCTC 4262 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || | || || ||| | || || | || | |||||| || || || ||| Sbjct 4261 GGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACAATACCATCAGA 4202 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAATTTA 42532 |||||||||||| || | || || | || || | ||||| ||||| | || Sbjct 4201 GGCTGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGGCGCTCGTCGGCGGTGAGAGTT-- 4144 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| | | || ||| ||| | ||| ||||| || | |||||||| || ||||| Sbjct 4143 TCCCAGTGACGGAGATCGGAAGACAAATCAACTTCCTCGGCAGTCCAAAAGGACGCTTCG 4084 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || || || ||||| | ||| | | | ||||| || || || || ||||| Sbjct 4083 GCTTTCTTGTACATTTCCCATACTTGTGGGTATTGGATCGGAAACAT-ACAAA 4032 >seq10024 Length=53621 Score = 154 bits (170), Expect = 2e-32 Identities = 389/586 (66%), Gaps = 4/586 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || || ||||||||||| || || ||||||| ||||| || ||||| | Sbjct 15005 ACAGCAAGCAAGCAAAATCGCAGTGGAGGCCTTCATCTCGCGAGATTAACTCATTGGAGA 14946 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || |||| Sbjct 14945 AAGTTAATCCAGGCATTAACCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAACTTCCA 14887 Query 42176 GAAAAGAAGATTCCTTCTACTGCC-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 || || || || || || | ||| ||||| || || | | ||| | || | | Sbjct 14886 GAGAAAAATATCCCCTCAA-TGCAAGCAAAAGCGATCAACCGCTCGGCGAAAGTTTCTCC 14828 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | | | ||||| || |||||| ||||| || || || || |||| |||||| || Sbjct 14827 GCCGTTGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACGCACGGCACCGTTTCAAT 14768 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 |||| ||||| | | ||||| | |||||| | || || |||| | ||||| Sbjct 14767 GGCACGGAAGAGGCGGCTCTTTTCCTCCGAATCTTTGATGTAAGTCTCGAGAAGCAGACT 14708 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||| || || || || ||||||||||| ||||| || || |||||| | ||||| Sbjct 14707 GTACATCTCGGAGTGGATATTTTCAATGGCGATCTGGAAACCATAGAAAGCACGCGCCTC 14648 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || | || || ||| | || || | || | |||||| || || || || Sbjct 14647 GGAGATTTGGACCTCTTTCATGAACCGGACGGCAAGATTTTCAAGGACGATACCATCGGA 14588 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 ||| |||||||| || | || ||| | || || | ||||| | || | | | Sbjct 14587 GGCAGCAAAAAAGGCGAGAACGTGTGTGATGAAGTGGCGCTCGTCGGCGGTGAGCGTTTC 14528 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| | || ||| ||| | ||| ||||| || | |||||||| || ||||| || Sbjct 14527 CCAGTGTGGGAGATCGGAAGACAAATCGACTTCCTCGGCAGTCCAAAACGACGCTTCGGC 14468 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 || || ||||| | ||| | | | ||||| || || || ||| Sbjct 14467 TTTCTTGTACATTTCCCAAACCTGTGGGTATTGGATCGGAAACATA 14422 >seq9751 Length=50749 Score = 147 bits (162), Expect = 3e-30 Identities = 385/585 (66%), Gaps = 2/585 (0%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||| ||||| |||||||| |||| ||||| ||||| || | Sbjct 49326 ACAACAAGCAAGCGAAATCACAGTGGAGACCCTCGTCTCGCGATATTAACTCGTTTGAGA 49267 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||||||||||| || |||||||| | ||| ||||| | |||| || ||| Sbjct 49266 AAGTTAATCCGGGCATTAAACCGCGCTTTTTCAACCAGAATAT-GGCGCAGAAACTTCCG 49208 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || ||||| || || || |||||||| || | | ||| | || | | Sbjct 49207 GAGAAAAAGATCCCCTCGACGCAAGCAAAGGCGATCAACCGCTCGGCGAAAGTTTCTCCT 49148 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| || ||||| |||||||| || ||||| |||| |||||| ||| Sbjct 49147 CCGTTGATCCATTTCATGGCCCACTCGGCCTTTTTAGCCACACACGGCACCGTTTCAATG 49088 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || ||||| | | ||||||| || || | || || || | | ||||| Sbjct 49087 GCGCGGAAGAGTCGGCTCTTTTCATCGGAGTCCTTGATGTAGGTCTCCAAAAGGAGACTG 49028 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || || || ||||| || || || || ||||||||| | |||||| Sbjct 49027 TACATCTCAGAGTGTATATTCTCAATAGCGATTTGGAAACCGTAGAAAGCCCGCGCCTCG 48968 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | | || || ||| | ||| || | || | ||||| || |||||||| | Sbjct 48967 GAGATTTGGACCTCTTTCATAAACCGAACGGCGAGGTTTTCAAGGACGATTCCGTCGGAG 48908 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || || ||||| || | ||||| | || || | || || | || | | | | | Sbjct 48907 GCGGCGAAAAAGGCAAGAACATGAGTGATGAAGTGGCGCTCATCGGCGGTGAGTGTTTCC 48848 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || | | || ||| || | ||| || || || | |||||||| || ||||| || Sbjct 48847 CAGTGACGGAGATCGGATGACAGATCGACCTCCTCGGCGGTCCAAAACGACGCTTCGGCT 48788 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 || || ||||| | ||| | | | ||||| || ||||| ||| Sbjct 48787 TTCTTGTACATTTCCCATACTTGTGGGTATTGGATGGGGAACATA 48743 >seq6788 Length=77562 Score = 125 bits (138), Expect = 1e-23 Identities = 308/467 (66%), Gaps = 0/467 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | ||| ||| ||| | || | ||||||||||| ||| ||| Sbjct 9085 CCTCCTTGATCAACATAACGAGCAATGTCATTGAACACCCGCAACATTGGAACAATGCCA 9026 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| |||||| | || ||||| || || | | ||||||||| || ||| Sbjct 9025 TTAGATGTACCATTTATTCCACGAATATAACTGCCCATACCTCGAATATTGTGAACTGAG 8966 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || || ||||| || Sbjct 8965 ACACCAATCCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTGTCATATATT 8906 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 ||||| | ||| |||| ||||| | | || ||||| || ||| | | | Sbjct 8905 CCCTCAACACTGTCATTTTTCATGCACAACAAGAAGCAGCTGCTCAATTGAGGTCTTGGA 8846 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || || || |||||||| || || |||| | ||| ||||| | | Sbjct 8845 GTTCCAGCATTGAAAAATGTGGGAGAAGCATGAGTGAACCCTCTTTGAGACATCATGTGA 8786 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || | | ||||| || | || || | ||| ||||| || || | | ||||||| Sbjct 8785 TAAGATTTTATAGCAGAACCAATGTCATCCTTATGAATTCCAACTGCATCCCTCATTAAC 8726 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || ||||| ||||| | | ||| | | ||||| | |||||| | || | Sbjct 8725 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGGACTTTCAGAAGGTAGGACCTCTCAAGG 8666 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| ||||||||||| | || |||||| || || || || || Sbjct 8665 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 8619 >seq6613 Length=80294 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||| || | || || ||||| || || |||||| ||| ||||| | | Sbjct 46401 AGTTCCAGCATTGAAAAGTGTGGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 46342 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||||| || || || || | ||| ||||| || || || | |||||| Sbjct 46341 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGGATTCCAACTGCAACCCTCATTAA 46282 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || ||||| ||||| | || ||| | | ||||| | |||||| | || | Sbjct 46281 CATGTGTTGAGGCCTTTCTATGACCTTCCCTTGAACTTTCAGGAGGTAGGACCTCTCAAG 46222 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||| ||||||||||| | || |||||| || || || || || Sbjct 46221 AGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 46174 >seq7334 Length=105305 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||| || | || |||||||| || || |||||| ||| ||||| | | Sbjct 98170 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 98229 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||||| || || || || | ||| ||||| || || || | |||||| Sbjct 98230 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACTGCAACCCTCATTAA 98289 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || ||||| ||||| | | ||| | | ||||| | |||||| | || | Sbjct 98290 CATGTGTTGAGGCCTTTCTA--ACCTTCCCTTGGACTTTCAGGAGGTAGGACCTCTCAAG 98347 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| ||||||||||| | || |||||| || || || || || Sbjct 98348 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 98395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | ||| |||| ||| | || | ||||||||||| ||| ||| Sbjct 97852 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAACATTGGAACAATGCCA 97911 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| |||||| || || ||||| || | | || ||||||||| || ||| Sbjct 97912 TTAGATGTACCATTTGTTCCATGAATATAACTGCTCATAGCTCGAATATTGTGAACTGAG 97971 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || | || || ||||| || Sbjct 97972 ACACCAATCCCTCCAGCTGATTTGCTGATGATAGCACACTCCATCAAAGTGTCATATATT 98031 Query 72358 CCCTCTATACTATCATCCATCATG 72381 ||||| ||||| ||||| ||||| Sbjct 98032 CCCTCAATACTGTCATCTTTCATG 98055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670489134570880