Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3059 122 9e-23 seq6053 98.7 1e-15 seq1278 96.9 4e-15 seq621 95.1 1e-14 seq6480 93.3 4e-14 seq3967 91.5 1e-13 seq2335 91.5 1e-13 seq10 91.5 1e-13 seq19277 87.8 2e-12 seq8995 87.8 2e-12 seq1833 87.8 2e-12 seq1145 87.8 2e-12 seq7183 84.2 2e-11 >seq3059 Length=143113 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| || ||||||||| || |||| || || |||||||| || Sbjct 2008 GTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCCAGTTGTTTGCCG 2067 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| || |||||||| ||||| ||||||||||| || ||| || ||| Sbjct 2068 GCAAAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTG 2127 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| ||||||| ||| | ||||||||||||| ||| Sbjct 2128 ACATTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTT 2187 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 2188 TTCACGAATATCTGCAT 2204 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||| | || || || || || ||||| |||||| Sbjct 2205 GCCACCGCGGAGACGGAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTATAATCGGC 2264 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | ||| || || || || || || |||||| ||| |||||||| ||||| Sbjct 2265 GAGTGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGAGG 2324 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || ||| || ||| | | || | ||||| | | ||| || Sbjct 2325 GATGCCTTCTTTATCTTGAATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGAC 2384 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | ||||||||||| | ||||| |||||||| ||||| Sbjct 2385 TTCAAGAGTGATTGTCTTGCCGGTTAGGGTTTTGACGAATATCTGCAT 2432 >seq6053 Length=86585 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||| | ||| ||||| || || ||||| ||||| Sbjct 18448 CCACCACGGAGACGGAGGACCAGATGTAGTGTCGATTCCTTCTGAATGTTATAATCAGCG 18389 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || || |||||| || || || || ||||| Sbjct 18388 AGAGTACGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGAGGG 18329 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 18328 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAGCTTTCGACT 18269 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||||||||| || ||||| ||||| || ||||| Sbjct 18268 TCAAGAGTTATAGTCTTGCCGGTTAAGGTTTTGACGAAGATCTGCAT 18222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || || ||||||||| || |||| || || | || Sbjct 18652 TGAAGAGTCGATTCCTTCTGAATATTGTAATCGGCCAAGGTGCGACCATCGTCTAACTGC 18593 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || |||||| || ||||| || ||||| |||||||| ||||| ||| || Sbjct 18592 TTCCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTG 18533 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | | ||| ||||||| ||| | ||||||||||| Sbjct 18532 GTCTTGACATTGTCTATGGTGTCAGAGCTTTCCACTTCAAGAGTGATAGTCTTGCCGGTT 18473 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | ||||| ||||| || |||||| Sbjct 18472 AGGGTTTTAACGAAGATCTGCATA 18449 >seq1278 Length=225562 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| ||||||| || || || ||||| |||||||||||| || || | ||| Sbjct 157832 CAAAACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAAGGTACGACCGTC 157773 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| ||||| || || |||| ||||||||||| || || || || ||||| ||||| Sbjct 157772 CTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTC 157713 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || || | | || | ||||| | | || ||||| | || | || Sbjct 157712 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 157653 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| |||| ||||| ||||| || ||||| Sbjct 157652 CTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 157620 >seq621 Length=294110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||| | ||| || ||||| || ||||| || ||| Sbjct 255607 CCACCACGGAGACGGAGGACCAGATGGAGTGTCGACTCTTTCTGAATGTTATAGTCGGCG 255548 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||| || || || || |||||| || || || || |||||| Sbjct 255547 AGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAATCGCTGTTGGTCCGGAGGT 255488 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 255487 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTATCTATGGTGTCTGAGCTTTCGACT 255428 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||| ||||| ||||| || ||||| Sbjct 255427 TCAAGTGTTATAGTCTTGCCGGTCAAGGTTTTGACGAAGATCTGCAT 255381 >seq6480 Length=82479 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| ||| || | ||||||| ||||| || ||||| | ||| |||| ||| ||| || Sbjct 5181 AATGTATCTGCAAGCCCTTGAACTCCAATACCAATGGGTCTATGACGCAAATTTGATCTT 5240 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 156975 || |||||||||| ||||||| ||||| |||||||||||| || Sbjct 5241 TTAGCAGTTTCAAAAGGGTAGTAATTGACATCAATAATTTTGTT 5284 >seq3967 Length=121343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||||| || || || ||||| |||||||| || || || | ||| Sbjct 66445 CAAGACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAGGTACGGCCGTC 66386 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| ||||| ||||| |||| ||||||||||| || || || || ||||| ||||| Sbjct 66385 CTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 66326 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || || | | || | ||||| | | || ||||| | || | || Sbjct 66325 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCCAAGGTGATTGT 66266 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||| ||||| ||||| |||||||| Sbjct 66265 TTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 66233 >seq2335 Length=171082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | ||| | |||| || || ||||| || || || ||||| Sbjct 23677 TGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCA 23618 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || || ||||| | ||||||||||||| |||| || | |||||||| || Sbjct 23617 GCCAAAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGT 23558 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||| || || | | || | ||| |||| | ||| Sbjct 23557 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTAACATTATCAATCGTATCCGAGCTTTCA 23498 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 23497 ACTTCCAAAGTAATCGTTTTCCCAGTCAAAGTCTTTACAAAAATCTGCAT 23448 >seq10 Length=577822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | || ||| | |||| || ||||| || || || || ||||| | Sbjct 542961 CCTCCACGAAGCCTCAGAACAAGGTGAAGAGTCGATTCCTTCTGGATATTATAATCCGCC 543020 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || ||||| || || |||| || |||||||| ||||| || Sbjct 543021 AAGGTACGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATGAGGCGTTGCTGGTCGGGTGGG 543080 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| || | | || | ||||| | || || Sbjct 543081 ATGCCTTCTTTGTCTTGAATTTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACC 543140 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||||||||| ||||| ||||| ||||||||| Sbjct 543141 TCGAGGGTTATGGTTTTGCCGGTCAAGGTTTTGACGAAGATTTGCATA 543188 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC- 143013 ||||| || || | ||| | ||| | |||| ||||| |||||||| ||||| ||||| Sbjct 561947 TGGCCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTTTGAATGTTATAATCA 562006 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 ||| | || ||| || || | |||||| || ||| |||| || | ||||||||| || Sbjct 562007 GCTAAA-GTCCTCCCATCCTCCAATTGTTTGCCTGCAAAGATAAGCCTTTGCTGATCAGG 562065 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| || || ||| || || | | || | ||| |||| ||| Sbjct 562066 GGGGATTCCTTCCTTATCCTGAATCTTCGCCTTCACATTATCTATCGTATCCGAACTTTC 562125 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | || |||||||||||||| || || || || ||||| Sbjct 562126 CACCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 562176 >seq19277 Length=10442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| ||| || | ||||||| ||||| || |||| | ||| |||| ||| ||| || Sbjct 8188 AATGTATCTGCAAGTCCTTGAACTCCAATACCAATGGCCCTATGACGCAAATTTGATCTT 8247 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 || ||||||| || ||||||| ||||| |||||||||||| |||| Sbjct 8248 TTGGCAGTTTAAACAGGGTAGTAATTGACATCAATAATTTTGTTCA 8293 >seq8995 Length=56531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| || |||||||| || |||| || ||||||||||| || Sbjct 47836 GTCGATTCCTTTTGGATATTGTAATCCGCCAAGGTGCGGCCATCCTCGAGTTGTTTTCCG 47777 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || |||||||| |||| ||||||||||| || ||| || ||| Sbjct 47776 GCGAAGATCAATCGCTGCTGATCCTGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTG 47717 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| || || | ||| | ||||||| ||| | ||| Sbjct 47716 ACATTATCTATGGTGTCGGAGCTTTCGACATCGAGAGTGATAGTCTTGCAGGTTAGGGTT 47657 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 47656 TTAACAAAGATCTGCATA 47639 >seq1833 Length=187927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | ||||| || ||||| || || |||||||||||| || || | ||| Sbjct 43496 CAAAACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCGTC 43555 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| || || || ||| |||| || | |||||||| || || ||||| || ||||| Sbjct 43556 CTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGGATGCCCTCCTTGTC 43615 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || || | | || | |||||| | | || ||||| | || | || Sbjct 43616 TTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAAGGTTATGGT 43675 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||||| ||||| ||||| |||||||| Sbjct 43676 TTTACCGGTCAGGGTTTTGACGAAGATTTGCAT 43708 >seq1145 Length=230503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| | |||| ||||||||| || || || Sbjct 12840 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCG 12781 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || |||||||| ||||| || |||||||||||||| ||| || || Sbjct 12780 GCGAAGATGAGGCGTTGCTGGTCGGGTGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTG 12721 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || || | || | ||||| || || | ||| Sbjct 12720 ACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 12661 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 12660 TTGACGAAGATCTGCATA 12643 >seq7183 Length=77289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| ||| || | ||||||| ||||| || ||||| | ||| | || ||| ||| || Sbjct 24880 AATGTATCTGCAAGCCCTTGAACTCCAATACCAATGGGTCTATGACACAAATTTGATCTT 24821 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 156975 || |||||||||| ||||||| | ||| |||||||||||| || Sbjct 24820 TTGGCAGTTTCAACAGGGTAGTACTTGACATCAATAATTTTGTT 24777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506523305852160