Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9751 149 9e-31 >seq9751 Length=50749 Score = 149 bits (164), Expect = 9e-31 Identities = 566/864 (66%), Gaps = 47/864 (5%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||||||||||||| || || | || || |||||||| | ||| |||||||||||||| Sbjct 48771 TGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCCGAGGAGGTCGATCTGTCA 48830 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 || || | ||||| || | | || | |||||| | || || | || Sbjct 48831 TCCGATCTCCGTCACTGGGAAACAC---TCACCGCCGATGAGCGCCACTTCATCACTCAT 48887 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT----GTTGACACG 125197 || | ||||| || |||| |||||| ||||||||| || || || ||| || Sbjct 48888 GTTCTTGCCTTTTTCGCCGCCTCCGACGGAATCGTCCTTGAAAACCTCGCCGTT----CG 48943 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 || ||||| | || | |||| | || ||||| ||||| ||||||||| | Sbjct 48944 GTTTATGAAAGAGGTCCAAATCTCCGAGGCG-CGGGCTTTCTACGGTTTCCAAATCGCTA 49002 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA-TCCG 125315 ||||||| | ||||| || |||||| | || | || | ||||| || |||| Sbjct 49003 TTGAGAATATACACTCTGAGATGTACAGTCTCCTTTTGGAGACCTACATCAAGGACTCCG 49062 Query 125316 CAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | | ||| | | ||||| ||| || || |||||||||| | | ||||||||| Sbjct 49063 --ATGAAAAGAGCCGACTCTTCCGCGCCATTGAAACGGTGCCGTGTGTGGCTAAAAAGGC 49120 Query 125375 TCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | |||| || |||||| | | | || || |||| |||| | || | | Sbjct 49121 CGAGTGGGCCATGAAATGGATCAACGGAGGAGAAACTTTCG----CCGAGCGGTTGATCG 49176 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTC 125492 | || || ||| ||||| ||||| || || || ||||| |||| |||| || ||| | Sbjct 49177 CCTTTGCTTGCGTCGAGGGGATCTTTTTCTCCGGAAGTTTCTGCG-CCATATTCTGGTTG 49235 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 || |||||||| | ||||||||| | || | |||||||| ||||| ||||||||| Sbjct 49236 AAAAAGCGCGGTTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATATCGCGAGACGAG 49295 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTA-TCTGCGTC----CCGAGT 125607 || || |||||||| ||| | | || | | || | ||| || | ||| | ||| Sbjct 49296 GGTCTCCACTGTGA-TTTCGCTTGCTTGTTGTACG-ATCTACTCCG-GTCTAAGCTCAGT 49352 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||| | ||| ||||| || || ||| || |||||| ||||| | Sbjct 49353 GAAGAGC--GCG-TGAAAGGG--------ATAATAAAAGAGGCCGTGTATATAGAGAGGG 49401 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGC 125726 |||| | ||| | || || | ||| || |||| |||||| || | ||||| | Sbjct 49402 AGTTCGTGTGCGACGCTCTGCC-CTGCGCATTGGTTGGTATGAACGGCGATTTAATGAGT 49460 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTAC 125786 ||||||| ||||| || || ||||| || ||| || |||| | | ||||| ||| Sbjct 49461 CAGTACATCGAGTTCGTAGCGGATCGGCTGCTGGGCGCGTTGGGGTACGGGAAGATGTAC 49520 Query 125787 AACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 || | ||||| ||||||| || || | | || || | |||| || || || || Sbjct 49521 AATGTTGCAAATCCATTTGATTGGATGGAACTG-ATTTCGTTGCAGGGGAAAACTAATTT 49579 Query 125846 TTTCGAGAAGAAGGTCAGCGAGTA 125869 |||||||||| || | ||||| Sbjct 49580 CTTCGAGAAGAGAGTGGGTGAGTA 49603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740341410058880