Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3059 111 1e-19 seq3224 104 2e-17 seq10 98.7 8e-16 seq1833 95.1 1e-14 seq8995 93.3 3e-14 seq621 89.7 4e-13 seq9927 86.0 5e-12 seq9733 86.0 5e-12 seq6038 84.2 2e-11 seq4679 82.4 6e-11 seq1260 82.4 6e-11 >seq3059 Length=143113 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||| | ||| | ||| | |||||||| || || ||||||||||| || Sbjct 1750 CCTCCACGAAGCCTCAGCACAAGGTGGAGAGTAGACTCTTTCTGGATATTGTAATCTGCA 1809 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || ||||||||||||| || || || | || | ||||| |||||| || Sbjct 1810 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGATCCGGAGGG 1869 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || ||||| || |||||| || || | | ||| ||||| | || |||| Sbjct 1870 ATCCCTTCTTTATCCTGAATTTTAGCCTTCACGTTGTCGATCGTATC-CGAGCTCTCCAC 1928 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||| ||||| || || || ||||||||||| || ||||| Sbjct 1929 CTCGAGGGTAATTGTTTTTCCCGTCAAGGTTTTGACAAATATCTGCAT 1976 >seq3224 Length=148195 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||| |||||||||||||| || | || || | || Sbjct 67038 AACACCAAGTGGAGAGTAGACTCCTTCTGAATATTGTAATCTGCTAGGGTCCTGCCATCT 66979 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| |||| | |||||||| |||| || | |||||| ||||| Sbjct 66978 TCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCCAGTGGTATGCCCTCCTTGTCC 66919 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | ||| ||| |||| || | ||| || || Sbjct 66918 TGAATCTTAGCTTTCACATTATCAATAGTGTCGGAGCTCTCCACCTCAAGGGTGATTGTC 66859 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| | ||||| ||||| || ||||| Sbjct 66858 TTGCCTGTAAGGGTTTTCACAAAGATCTGCAT 66827 >seq10 Length=577822 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | ||| | || | ||| | || || ||||| || ||||| ||||||| Sbjct 542959 TTCCTCCACGAAGCCTCAGAACAAGGTGAAGAGTCGATTCCTTCTGGATATTATAATCCG 543018 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | |||| ||||||||||| || || | || || | ||||| || | Sbjct 543019 CCAAGGTACGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATGAGGCGTTGCTGGTCGGGTG 543078 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| |||||||| |||||| || || | | ||| || ||| | ||| Sbjct 543079 GGATGCCTTCTTTGTCTTGAATTTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGA 543138 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| |||||||| || || || |||||||| || |||||||| Sbjct 543139 CCTCGAGGGTTATGGTTTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 543187 Score = 87.8 bits (96), Expect = 1e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | ||| | || | ||| | || || ||||| || ||||| ||||||| Sbjct 562176 TTCCTCCACGAAGCCTCAGAACAAGGTGAAGAGTCGATTCCTTCTGGATATTATAATCCG 562235 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | |||| ||||||||||| || || | || || | ||||| || | Sbjct 562236 CCAAGGTACGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATGAGGCGTTGCTGGTCGGGTG 562295 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| |||||||| |||||| || || | | ||| || ||| | ||| Sbjct 562296 GGATGCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGA 562355 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT-TTTAAATCTC 19051 |||| ||| ||||| || || || | ||||| ||||| || ||||| ||| ||| | Sbjct 562356 CCTCGAGGGTTATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATATTTCAATGT- 562414 Query 19052 TTATAAA 19058 | ||||| Sbjct 562415 TGATAAA 562421 >seq1833 Length=187927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| || | || || ||||| || || |||||||| ||| Sbjct 43482 CCACCACGAAGCCTCAAAACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGCC 43541 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| || || ||| | || || |||||||||||| || Sbjct 43542 AAGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGTGGG 43601 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || || || || | | ||| || ||| ||| | Sbjct 43602 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACT 43661 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||||||||| || | |||||||| || |||||||| Sbjct 43662 TCCAAGGTTATGGTTTTACCGGTCAGGGTTTTGACGAAGATTTGCAT 43708 >seq8995 Length=56531 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||| | ||| | |||||||| || || |||||||||||||| Sbjct 48094 CCACCACGAAGCCTCAGCACAAGGTGGAGAGTAGACTCTTTCTGGATATTGTAATCCGCA 48035 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || ||||||||||||| || || || | || | ||||| || || || Sbjct 48034 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGGCCCGGTGGG 47975 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || |||||||| |||||| || || | | | | ||||| | || ||| Sbjct 47974 ATCCCTTCTTTGTCCTGAATTTTAGCCTTCACGTTGTCAATCGTATC-CGAGCTCTCTAC 47916 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| ||||| || |||||||| ||||| ||||| Sbjct 47915 CTCCAGGGTAATTGTTTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 47868 >seq621 Length=294110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||| | || | ||| | ||||||||| || || ||||||||||| || Sbjct 256063 CCTCCACGAAGCCTCAGAACAAGGTGAAGCGTAGACTCTTTCTGGATATTGTAATCTGCA 256004 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | || |||||||| || || || |||| | ||||| || ||| || Sbjct 256003 AGGGTCCTGCCATCTTCCAGCTGCTTCCCTGCGAAAATCAACCTCTGTTGGTCCGGAGGA 255944 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | ||| || || || |||||| ||| || | | ||| || || | || ||| Sbjct 255943 ATGCCTTCCTTATCCTGGATTTTCGCTTTCACATTGTCGATCGTGTC-CGAGCTCTCTAC 255885 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 255884 CTCAAGGGTAATTGTTTTTCCTGTCAAGGTTTTAACAAAGATCTGCAT 255837 >seq9927 Length=49610 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||||||||| || || || || | || || | || Sbjct 13767 AACACCAAGTGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCGAGAGTCCTGCCATCT 13826 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| |||| | |||||||| ||| || | |||||| ||||| Sbjct 13827 TCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCCTGTGGGATGCCCTCCTTGTCC 13886 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || || | | ||| ||||| | |||| || | || |||||| Sbjct 13887 TGAATCTTGGCCTTCAGGTTATCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTT 13946 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | ||||| ||||| || ||||| Sbjct 13947 TTTCCAGTGAGTGTTTTCACAAAGATCTGCAT 13978 >seq9733 Length=51005 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| |||||||||||||| |||| || | | || |||| ||||| || Sbjct 37001 GTTGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGTTTCCCA 37060 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||||||||||| ||| | || |||||||| ||| ||| || Sbjct 37061 GCAAAAATCAACCTCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGAATCTTCGCCTTG 37120 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | |||| || | ||||||||||| || || ||||| Sbjct 37121 ACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAATGGTTTTCCCAGTCAAAGTC 37180 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 37181 TTGACGAAGATCTGCAT 37197 >seq6038 Length=86802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| || |||||||| ||||| || | ||| | | |||||| Sbjct 72344 ACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGTGTCCTACCATCCTCC 72285 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | || || ||||| ||||| || | ||||| ||||| Sbjct 72284 AGCTGCTTGCCAGCGAAGATCAGCCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCCTGG 72225 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | ||||| | ||| ||| | |||||| || || Sbjct 72224 ATCTTAGCTTTCACATTGTCAATTGTATCTGAACTCTCAACTTCCAAGGTAATAGTCTTT 72165 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | ||| || |||||||||||||| Sbjct 72164 CCTGTAAGAGTCTTCACAAAAATTTGCAT 72136 >seq4679 Length=107372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || || || || |||| ||| | | || || Sbjct 37822 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCCAATGTGCGGCCATCTTC 37881 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || ||||| ||| |||| | |||||||| || ||| | ||||| ||||| Sbjct 37882 CAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTG 37941 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||||| | | | | ||||| | |||| || | |||||||| || Sbjct 37942 AATCTTTGCCTTTACATTGTCAATGGTATCTGAACTCTCCACCTCCAATGTAATGGTCTT 38001 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || |||||||||||||| Sbjct 38002 TCCGGTGAGGGTCTTAACAAAAATTTGCAT 38031 >seq1260 Length=223926 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || || || || |||| ||| | | || || Sbjct 116466 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCCAATGTGCGGCCATCTTC 116407 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || ||||| ||| |||| | |||||||| || ||| | ||||| ||||| Sbjct 116406 CAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTG 116347 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||||| | | | | ||||| | |||| || | |||||||| || Sbjct 116346 AATCTTTGCCTTTACATTGTCAATGGTATCTGAACTCTCCACCTCCAATGTAATGGTCTT 116287 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || |||||||||||||| Sbjct 116286 TCCGGTGAGGGTCTTAACAAAAATTTGCAT 116257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414181283666272