Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3059 86.0 4e-12 seq1278 86.0 4e-12 seq7474 84.2 1e-11 seq3967 84.2 1e-11 >seq3059 Length=143113 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||||| || ||||| ||||||||||| | ||| || | || ||| Sbjct 1996 ACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCC 2055 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || || ||| || || || ||||| |||| || ||||||||||| || | Sbjct 2056 AGTTGTTTGCCGGCAAAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGA 2115 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | || |||||| | || || || ||||| || || || Sbjct 2116 ATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTG 2175 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| ||||| || |||||| Sbjct 2176 CCGGTCAGGGTTTTCACGAATATCTGCATG 2205 >seq1278 Length=225562 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | || | || || || ||||||||||||||||||| |||| | | Sbjct 158062 CGCAAGACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAATCAGCCAAAGTCCTTCCA 158003 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| || || || | |||||||| | ||| || |||||||| Sbjct 158002 TCTTCCAATTGTTTCCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATCCCTTCTTTG 157943 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | || || | | |||||| || | || |||||||| || Sbjct 157942 TCCTGAATCTTCGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAATG 157883 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | |||||| ||||| || ||||| Sbjct 157882 GTTTTCCCGGTCAAAGTTTTGACGAAGATCTGCAT 157848 >seq7474 Length=135391 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| ||||| ||||| || |||| ||| | | Sbjct 127120 CGCAACACCAAGTGAAGAGTCGACTCCTTTTGGATATTATAGTCAGCCAACGTCCTTCCA 127061 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | |||||| ||| ||| || | | ||||||||| | ||| || || || || Sbjct 127060 TCTTCAAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGGTCTGGGGGGATACCCTCCTTA 127001 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| | || ||| |||| ||| Sbjct 127000 TCTTGGATCTTTGCC---TTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTG 126944 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| |||||||| || || || || ||||| Sbjct 126943 ATGGTCTTTCCAGTAAGAGTCTTCACAAAGATCTGCAT 126906 >seq3967 Length=121343 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| | | || ||| |||||||| | |||||||| ||||| || ||||| |||| | Sbjct 66459 CCGCCACGAAGCCTCAAGACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCC 66400 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | ||| || | || |||||| || || | |||||||||||||| || Sbjct 66399 AAGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGG 66340 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | ||| || || | | || |||||| | | Sbjct 66339 ATTCCTTCCTTGTCTTGGATCTTGGCC---TTGACGTTGTCGATGGTGTCGGAGCTCTCG 66283 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||| || || ||||| || || || ||||| ||||| ||||||||| Sbjct 66282 ACTTCCAAGGTGATTGTTTTGCCGGTCAGGGTTTTCACGAAGATTTGCATG 66232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318476551216224