Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq14711 104 2e-17 seq10 98.7 7e-16 seq7474 95.1 9e-15 seq8995 89.7 4e-13 seq10551 86.0 4e-12 seq9733 86.0 4e-12 seq3059 86.0 4e-12 seq1278 86.0 4e-12 seq6053 84.2 2e-11 seq14362 82.4 5e-11 seq2335 82.4 5e-11 >seq14711 Length=21231 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| ||||| |||||||||||| | | |||| || Sbjct 5049 ACCAAATGGAGAGTAGACTCCTTTTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 4990 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||||||||| ||||| | ||| ||||| | || | |||||||| || | Sbjct 4989 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCCTGA 4930 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || || ||| ||||||| ||| || || | |||||||| || Sbjct 4929 ATTTTGGCTTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAAGGTAATTGTCTTT 4870 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | |||||| ||||| ||||||||| Sbjct 4869 CCAGTAAGAGTCTTGACAAAGATTTGCATG 4840 >seq10 Length=577822 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| |||||||| ||| | | |||| ||||||||||| |||||||| Sbjct 542768 CTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTGCCTGCAAA 542827 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || |||||| || | || | ||||| ||||| ||| || || || | Sbjct 542828 GATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTCGCCTTCACATT 542887 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | ||||| | ||||| || | || |||||||| ||||| || |||||||| Sbjct 542888 ATCTATTGTATCAGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCAC 542947 Query 44110 AAATATTTGCAT 44121 |||||| ||||| Sbjct 542948 AAATATCTGCAT 542959 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||||||||| |||||||| ||| | | |||| ||||||||||| |||||||| Sbjct 561985 CTCTTTTTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTGCCTGCAAA 562044 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || |||||| || | || | ||||| ||||| ||| || || || | Sbjct 562045 GATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTCGCCTTCACATT 562104 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | ||||| | ||||| || | || |||||||| ||||| || |||||||| Sbjct 562105 ATCTATCGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCAC 562164 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 562165 AAAGATCTGCAT 562176 >seq7474 Length=135391 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| ||||| || ||||||||| | | |||| || Sbjct 126886 ACCAAATGGAGAGTAGACTCCTTTTGGATGTTATAATCGGCAAGAGTTCTTCCATCTTCA 126827 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA-GGTACACCTTCTTTATCTGA 44031 | |||||||||||||| ||||| | ||| |||| |||| | | |||||||| || Sbjct 126826 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGT-CTGATGAGATTCCTTCTTTGTCCTG 126768 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||| || || ||| ||||| | ||| || || | |||||||| || Sbjct 126767 AATTTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAAGGTAATTGTCTT 126708 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | |||||| ||||| ||||||||| Sbjct 126707 TCCGGTGAGAGTCTTGACAAAGATTTGCATG 126677 >seq8995 Length=56531 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||||| || || ||||| || ||||||||| |||| | ||||||| Sbjct 47340 CATCCTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCTT 47281 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| || || || || | | || |||| ||||| |||| || | Sbjct 47280 TATCTTGAATCTTGGCCTTAACATTATCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGA 47221 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| ||||| | ||||||||||| || ||||| Sbjct 47220 TTGTTTTTCCGGTGAGGGTCTTCACAAAGATCTGCAT 47184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || || ||||| ||||| ||||| || || |||| || Sbjct 47848 ACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCCAAGGTGCGGCCATCCTCG 47789 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||||||| || || ||||| || ||||| |||||||| | |||||||||||| | Sbjct 47788 AGTTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCTGAGGGATGCCTTCTTTATCTTGA 47729 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| || | | || || | || ||||||| || || || || Sbjct 47728 ATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGACATCGAGAGTGATAGTCTTG 47669 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || ||||| || ||||| Sbjct 47668 CAGGTTAGGGTTTTAACAAAGATCTGCAT 47640 >seq10551 Length=45279 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || ||| || || || || ||||| || || || |||| || Sbjct 29788 CACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAGTCAGCCAAGGTGCGGCCATCCTC 29729 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || ||||||||||||| ||||||||| | || | ||||| || ||| Sbjct 29728 GAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGGGGAATCCCTTCCTTGTCTTG 29669 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||||| || ||| || || | ||||| |||| || || ||||| Sbjct 29668 AATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTTTT 29609 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| ||||| |||||||| Sbjct 29608 GCCGGTAAGGGTCTTAACAAAGATTTGCAT 29579 >seq9733 Length=51005 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || ||||| ||||||| ||||| || | || | ||||||| Sbjct 37041 CATCTTCCAATTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATCCCTTCTT 37100 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || ||| || ||||| || ||| ||||| | |||||| || | |||| Sbjct 37101 TGTCCTGAATCTTCGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAA 37160 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || |||||||| || || || ||||| Sbjct 37161 TGGTTTTCCCAGTCAAAGTCTTGACGAAGATCTGCAT 37197 >seq3059 Length=143113 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || || ||||| ||||| |||||| || || |||| ||| Sbjct 1996 ACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCC 2055 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || ||||| ||||| || ||||| ||| |||| | |||||||||||| | Sbjct 2056 AGTTGTTTGCCGGCAAAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGA 2115 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| || | | || || | || || || | || || || || Sbjct 2116 ATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTG 2175 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | || ||||| ||||| |||||| Sbjct 2176 CCGGTCAGGGTTTTCACGAATATCTGCATG 2205 >seq1278 Length=225562 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || || || ||||||| |||||||| | || | ||||||| Sbjct 158004 CATCTTCCAATTGTTTCCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATCCCTTCTT 157945 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || ||| || ||||| || ||| ||||| | |||||| || | |||| Sbjct 157944 TGTCCTGAATCTTCGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAA 157885 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| ||||| ||||| || || || || ||||| Sbjct 157884 TGGTTTTCCCGGTCAAAGTTTTGACGAAGATCTGCAT 157848 >seq6053 Length=86585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| || || || ||||| ||| | ||| | || || Sbjct 18202 ACCAGATGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGCGAGGGTACGACCGTCTTCA 18143 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| || || ||||| |||||||| || |||| | |||||| || ||| | Sbjct 18142 AGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGA 18083 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| || | | || || | |||||| |||| || |||||||| Sbjct 18082 ATCTTGGACTTGACGTTATCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATTGTTTTG 18023 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||||||||| || ||||| Sbjct 18022 CCGGTGAGGGTCTTCACAAAGATCTGCAT 17994 >seq14362 Length=23126 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || |||||| || || || || || || || |||| || Sbjct 16644 CACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTC 16703 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || ||||||||||||| |||||||| | || | ||| || |||||| Sbjct 16704 GAGTTGTTTACCGGCAAATATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 16763 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||||| | ||| ||| || | ||| || || | || || || || Sbjct 16764 AATTTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTT 16823 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||||||||| |||||||| Sbjct 16824 CCCAGTGAGTGTCTTCACAAAGATTTGCAT 16853 >seq2335 Length=171082 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTG 43977 || || ||| |||||| |||||||||||||| | || | || |||| |||||||| Sbjct 23650 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGCCAAAGTCCTGC-CATCTTCCAATTG 23592 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || ||||| || | || ||||| ||| | || | ||||| || || ||| || Sbjct 23591 TTTACCAGCAAAGATGAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 23532 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || || || ||| ||||| | || || || | ||||| ||||| || || Sbjct 23531 AGCCTTAACATTATCAATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTTTTCCCAGT 23472 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 |||||||| ||||| || ||||| Sbjct 23471 CAAAGTCTTTACAAAAATCTGCAT 23448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354442553356224