Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq14711 104 2e-17
seq10 98.7 7e-16
seq7474 95.1 9e-15
seq8995 89.7 4e-13
seq10551 86.0 4e-12
seq9733 86.0 4e-12
seq3059 86.0 4e-12
seq1278 86.0 4e-12
seq6053 84.2 2e-11
seq14362 82.4 5e-11
seq2335 82.4 5e-11
>seq14711
Length=21231
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||||||| || || ||| ||||| |||||||||||| | | |||| ||
Sbjct 5049 ACCAAATGGAGAGTAGACTCCTTTTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 4990
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| |||||||||||||| ||||| | ||| ||||| | || | |||||||| || |
Sbjct 4989 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCCTGA 4930
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
||||| ||| || || ||| ||||||| ||| || || | |||||||| ||
Sbjct 4929 ATTTTGGCTTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAAGGTAATTGTCTTT 4870
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || | |||||| ||||| |||||||||
Sbjct 4869 CCAGTAAGAGTCTTGACAAAGATTTGCATG 4840
>seq10
Length=577822
Score = 98.7 bits (108), Expect = 7e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| ||||| |||||||| ||| | | |||| ||||||||||| ||||||||
Sbjct 542768 CTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTGCCTGCAAA 542827
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|| | || |||||| || | || | ||||| ||||| ||| || || || |
Sbjct 542828 GATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTCGCCTTCACATT 542887
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| | | ||||| | ||||| || | || |||||||| ||||| || ||||||||
Sbjct 542888 ATCTATTGTATCAGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCAC 542947
Query 44110 AAATATTTGCAT 44121
|||||| |||||
Sbjct 542948 AAATATCTGCAT 542959
Score = 98.7 bits (108), Expect = 7e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||||||||| |||||||| ||| | | |||| ||||||||||| ||||||||
Sbjct 561985 CTCTTTTTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTGCCTGCAAA 562044
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|| | || |||||| || | || | ||||| ||||| ||| || || || |
Sbjct 562045 GATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTCGCCTTCACATT 562104
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| | | ||||| | ||||| || | || |||||||| ||||| || ||||||||
Sbjct 562105 ATCTATCGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTCAATGTCTTCAC 562164
Query 44110 AAATATTTGCAT 44121
||| || |||||
Sbjct 562165 AAAGATCTGCAT 562176
>seq7474
Length=135391
Score = 95.1 bits (104), Expect = 9e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||||||| || || ||| ||||| || ||||||||| | | |||| ||
Sbjct 126886 ACCAAATGGAGAGTAGACTCCTTTTGGATGTTATAATCGGCAAGAGTTCTTCCATCTTCA 126827
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA-GGTACACCTTCTTTATCTGA 44031
| |||||||||||||| ||||| | ||| |||| |||| | | |||||||| ||
Sbjct 126826 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGT-CTGATGAGATTCCTTCTTTGTCCTG 126768
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|||||| ||| || || ||| ||||| | ||| || || | |||||||| ||
Sbjct 126767 AATTTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAAGGTAATTGTCTT 126708
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
||||| | |||||| ||||| |||||||||
Sbjct 126707 TCCGGTGAGAGTCTTGACAAAGATTTGCATG 126677
>seq8995
Length=56531
Score = 89.7 bits (98), Expect = 4e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | |||||||| || || ||||| || ||||||||| |||| | |||||||
Sbjct 47340 CATCCTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCTT 47281
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
||||| ||| || || || || | | || |||| ||||| |||| || |
Sbjct 47280 TATCTTGAATCTTGGCCTTAACATTATCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGA 47221
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||| ||||| | ||||||||||| || |||||
Sbjct 47220 TTGTTTTTCCGGTGAGGGTCTTCACAAAGATCTGCAT 47184
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||| ||| || || || ||||| ||||| ||||| || || |||| ||
Sbjct 47848 ACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCCAAGGTGCGGCCATCCTCG 47789
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| ||||||||| || || ||||| || ||||| |||||||| | |||||||||||| |
Sbjct 47788 AGTTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCTGAGGGATGCCTTCTTTATCTTGA 47729
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || |||||| || | | || || | || ||||||| || || || ||
Sbjct 47728 ATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGACATCGAGAGTGATAGTCTTG 47669
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| ||||| || || ||||| || |||||
Sbjct 47668 CAGGTTAGGGTTTTAACAAAGATCTGCAT 47640
>seq10551
Length=45279
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
|||||| || || ||| || || || || ||||| || || || |||| ||
Sbjct 29788 CACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAGTCAGCCAAGGTGCGGCCATCCTC 29729
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| |||||| || ||||||||||||| ||||||||| | || | ||||| || |||
Sbjct 29728 GAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGGGGAATCCCTTCCTTGTCTTG 29669
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||| || ||||| || ||| || || | ||||| |||| || || |||||
Sbjct 29668 AATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTTTT 29609
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| | ||||| ||||| ||||||||
Sbjct 29608 GCCGGTAAGGGTCTTAACAAAGATTTGCAT 29579
>seq9733
Length=51005
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||||||||| || ||||| ||||||| ||||| || | || | |||||||
Sbjct 37041 CATCTTCCAATTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATCCCTTCTT 37100
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| || ||| || ||||| || ||| ||||| | |||||| || | ||||
Sbjct 37101 TGTCCTGAATCTTCGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAA 37160
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| ||||| || || |||||||| || || || |||||
Sbjct 37161 TGGTTTTCCCAGTCAAAGTCTTGACGAAGATCTGCAT 37197
>seq3059
Length=143113
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||| ||| || || || ||||| ||||| |||||| || || |||| |||
Sbjct 1996 ACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCC 2055
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| |||||| || ||||| ||||| || ||||| ||| |||| | |||||||||||| |
Sbjct 2056 AGTTGTTTGCCGGCAAAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGA 2115
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || |||||| || | | || || | || || || | || || || ||
Sbjct 2116 ATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTG 2175
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122
||||| | || ||||| ||||| ||||||
Sbjct 2176 CCGGTCAGGGTTTTCACGAATATCTGCATG 2205
>seq1278
Length=225562
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||||||||| || || || ||||||| |||||||| | || | |||||||
Sbjct 158004 CATCTTCCAATTGTTTCCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATCCCTTCTT 157945
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| || ||| || ||||| || ||| ||||| | |||||| || | ||||
Sbjct 157944 TGTCCTGAATCTTCGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAA 157885
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| ||||| ||||| ||||| || || || || |||||
Sbjct 157884 TGGTTTTCCCGGTCAAAGTTTTGACGAAGATCTGCAT 157848
>seq6053
Length=86585
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||| ||| || || ||| || || || ||||| ||| | ||| | || ||
Sbjct 18202 ACCAGATGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGCGAGGGTACGACCGTCTTCA 18143
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| ||| ||||| || || ||||| |||||||| || |||| | |||||| || ||| |
Sbjct 18142 AGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGA 18083
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || ||||| || | | || || | |||||| |||| || ||||||||
Sbjct 18082 ATCTTGGACTTGACGTTATCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATTGTTTTG 18023
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| | ||||||||||| || |||||
Sbjct 18022 CCGGTGAGGGTCTTCACAAAGATCTGCAT 17994
>seq14362
Length=23126
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
|||||| || || || |||||| || || || || || || || |||| ||
Sbjct 16644 CACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTC 16703
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| |||||| || ||||||||||||| |||||||| | || | ||| || ||||||
Sbjct 16704 GAGTTGTTTACCGGCAAATATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 16763
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|||||| ||||| | ||| ||| || | ||| || || | || || || ||
Sbjct 16764 AATTTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTT 16823
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || | ||||||||||| ||||||||
Sbjct 16824 CCCAGTGAGTGTCTTCACAAAGATTTGCAT 16853
>seq2335
Length=171082
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTG 43977
|| || ||| |||||| |||||||||||||| | || | || |||| ||||||||
Sbjct 23650 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGCCAAAGTCCTGC-CATCTTCCAATTG 23592
Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037
||| || ||||| || | || ||||| ||| | || | ||||| || || ||| ||
Sbjct 23591 TTTACCAGCAAAGATGAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 23532
Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097
|| || || ||| ||||| | || || || | ||||| ||||| || ||
Sbjct 23531 AGCCTTAACATTATCAATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTTTTCCCAGT 23472
Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121
|||||||| ||||| || |||||
Sbjct 23471 CAAAGTCTTTACAAAAATCTGCAT 23448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354442553356224
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