Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1278 100 2e-16 seq10 98.7 8e-16 seq9733 96.9 3e-15 seq7474 93.3 4e-14 seq3059 91.5 1e-13 seq3967 87.8 2e-12 seq14711 84.2 2e-11 seq2335 82.4 6e-11 >seq1278 Length=225562 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| |||||||| |||||||| ||| ||| | ||||||||||||| Sbjct 158050 TGAAGAGTGGATTCCTTTTGTATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 157991 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | |||||| || || ||| | ||||||||||| ||| || Sbjct 157990 TTCCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATCCCTTCTTTGTCCTGAATCTTC 157931 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | ||| | ||| | ||| |||| ||||||||||| |||||| Sbjct 157930 GCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAATGGTTTTCCCGGTC 157871 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || |||||||| || || ||||| Sbjct 157870 AAAGTTTTGACGAAGATCTGCAT 157848 >seq10 Length=577822 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| |||||||| ||||| ||||| | | ||| | ||| ||||||||| Sbjct 561974 TGAAGGGTAGACTCTTTTTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGT 562033 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | |||||||| || ||||| ||| | ||||| || || ||| || Sbjct 562034 TTGCCTGCAAAGATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTC 562093 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | | | | ||| | |||| |||| ||| || |||||||||||| Sbjct 562094 GCCTTCACATTATCTATCGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTC 562153 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 562154 AATGTCTTCACAAAGATCTGCATT 562177 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| | | ||| | ||| ||||||||| Sbjct 542757 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGT 542816 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | |||||||| || ||||| ||| | ||||| || || ||| || Sbjct 542817 TTGCCTGCAAAGATAAGCCTTTGCTGATCAGGGGGGATTCCTTCCTTATCCTGAATCTTC 542876 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | | | | ||| | |||| |||| ||| || |||||||||||| Sbjct 542877 GCCTTCACATTATCTATTGTATCAGAACTTTCCACCTCCAAGGTGATTGTTTTGCCGGTC 542936 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 542937 AATGTCTTCACAAATATCTGCATT 542960 >seq9733 Length=51005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| || | ||| || || ||||| || || || |||||||| ||| ||| | ||| Sbjct 36985 CAAGACAAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATC 37044 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | |||||| ||||| ||| | ||||||||||| Sbjct 37045 TTCCAATTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATCCCTTCTTTGTC 37104 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || || || | ||| | ||| | ||| |||| |||||||| Sbjct 37105 CTGAATCTTCGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCAGAGTAATGGT 37164 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| || ||||| || || ||||| Sbjct 37165 TTTCCCAGTCAAAGTCTTGACGAAGATCTGCAT 37197 >seq7474 Length=135391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || ||||| ||||| |||||| | | |||| | |||||| Sbjct 126886 ACCAAATGGAGAGTAGACTCCTTTTGGATGTTATAATCGGCAAGAGTTCTTCCATCTTCA 126827 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGGC 20118 | ||||| || ||| |||| | || ||||| || || | | | ||||||||||| Sbjct 126826 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGATGAG-ATTCCTTCTTTGTCCTG 126768 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| |||||| | ||| | ||| | || |||| |||||| || || Sbjct 126767 AATTTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAAGGTAATTGTCTT 126708 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| | || |||||||| |||||||| Sbjct 126707 TCCGGTGAGAGTCTTGACAAAGATTTGCAT 126678 >seq3059 Length=143113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 19973 TATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTG 20032 |||||| | ||||| || | ||||| ||| | || || ||||| ||||| || || ||| Sbjct 1741 TATCATATCCCTCCACGAAGCCTCAGCACAAGGTGGAGAGTAGACTCTTTCTGGATATTG 1800 Query 20033 TAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGA 20092 ||||| | | || | || |||| || ||||| || | || | |||||||||| Sbjct 1801 TAATCTGCAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGA 1860 Query 20093 TCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCA 20152 || || | |||||||| || |||||| ||||| | | | | | ||| | | Sbjct 1861 TCCGGAGGGATCCCTTCTTTATCCTGAATTTTAGCCTTCACGTTGTCGATCGTATC-CGA 1919 Query 20153 GGT-TCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | | ||| || | |||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 1920 GCTCTCCACCTCGAGGGTAATTGTTTTTCCCGTCAAGGTTTTGACAAATATCTGCAT 1976 >seq3967 Length=121343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || |||||||| || || || |||||||| ||| ||| | ||||||||||||| Sbjct 66663 TGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 66604 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | |||||| ||||| ||| | ||||| ||||| ||| || Sbjct 66603 TTCCCAGCGAAAATCAACCTCTGCTGATCTGGGGGAATCCCTTCCTTGTCCTGAATCTTC 66544 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | | | | ||| | ||| |||| ||||||||||| || ||| Sbjct 66543 GCCTTCACGTTATCTATCGTATCAGAACTCTCCACCTCCAGAGTAATGGTTTTCCCAGTC 66484 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || || ||||| Sbjct 66483 AAAGTCTTGACGAAGATCTGCAT 66461 >seq14711 Length=21231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || ||||| || || |||||| | | |||| | |||||| Sbjct 5049 ACCAAATGGAGAGTAGACTCCTTTTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 4990 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 4989 AGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCCTGA 4930 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| | ||| | || |||| |||||| || || Sbjct 4929 ATTTTGGCTTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAAGGTAATTGTCTTT 4870 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || |||||||| |||||||| Sbjct 4869 CCAGTAAGAGTCTTGACAAAGATTTGCAT 4841 >seq2335 Length=171082 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || ||||| || || || ||||| ||| ||| | ||||||||||||| Sbjct 23650 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGCCAAAGTCCTGCCATCTTCCAATTGT 23591 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || |||||||| ||||| || | ||||| ||||| ||| || Sbjct 23590 TTACCAGCAAAGATGAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTA 23531 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAG-GTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | ||| | ||| | || ||| ||||| ||||| ||||| || || Sbjct 23530 GCCTTAACATTATCAATCGTATC-CGAGCTTTCAACTTCCAAAGTAATCGTTTTCCCAGT 23472 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || || |||||||| ||||| Sbjct 23471 CAAAGTCTTTACAAAAATCTGCAT 23448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419190948142128