Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq25691 221 7e-53 >seq25691 Length=1910 Score = 221 bits (244), Expect = 7e-53 Identities = 382/555 (69%), Gaps = 0/555 (0%) Strand=Plus/Plus Query 72075 GTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCT 72134 ||| ||||| | || || | ||||| || | || || || |||||| | | | ||| Sbjct 22 GTTAATCAGGCACGCATCAGAACAGGTAAATTAAATGATGAAGATTGGTCTAGAATGTCT 81 Query 72135 GGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTG 72194 || |||| | || ||||| | || |||| |||| ||| ||||| || || || Sbjct 82 GGGACAATTAATGTTTTGTTGAAAAAAAAGAACATTTATATAGATGATTCTTCAGCTCTT 141 Query 72195 ACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGC 72254 || || | || | || || || ||||||||| ||||| |||||| |||||| | Sbjct 142 ACACCTAGTGAAGTTCGCTCTCGAGCTCGTCGTATTTATCGTGAAAATAATGGTTTAACT 201 Query 72255 ATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACG 72314 | |||||| | || || | ||||| ||| | || || || |||||| |||| Sbjct 202 TTAATTATGGTAGATTATTTACAACTGATGAGAGTTCCATCTCTTTCAGATAATAGAACT 261 Query 72315 CTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG 72374 || |||||||| || ||||| | || | || ||| | || || ||| ||||||| || Sbjct 262 CTTGAAATTGCTGAAATTTCCAGAACATTAAAAGCGCTCGCAAAAGAACTACAAGTCCCA 321 Query 72375 GTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTA 72434 || | || ||||||||| | ||||| || | ||||| | || || ||| |||| ||| Sbjct 322 GTAATCGCTTTGTCACAATTAAATCGTTCTTTAGAACAAAGAGCAGATAAAAGACCAGTA 381 Query 72435 AATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTG 72494 || ||||||||| | ||||| || || | || || |||||||| | || |||||| | Sbjct 382 AACTCAGATTTAAGAGAATCTGGTTCATTAGAACAAGACGCAGATTTAATAATGTTTATA 441 Query 72495 TATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATC 72554 ||||| || ||| | || || ||||||| | || || || || ||| | || || Sbjct 442 TATCGAGATGAAATATACCATGAAAATAGCGATTTTAAAGGTATAGCAGAGATTATAATT 501 Query 72555 GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCA 72614 ||||| ||| ||||||| ||||| || || | || || |||| || || || | || Sbjct 502 GGAAAACAAAGAAATGGACCAATCGGAACAATTAGTTTAACTTTCAATGGACATTGGTCT 561 Query 72615 CGGTTTGATAACTAT 72629 | |||||||||||| Sbjct 562 AGATTTGATAACTAT 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302948829225648