Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq5102 214 5e-51 seq3550 203 9e-48 seq31365 199 1e-46 seq695 176 1e-39 seq3386 111 5e-20 >seq5102 Length=101622 Score = 214 bits (236), Expect = 5e-51 Identities = 290/402 (72%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 52337 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 52278 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| ||||||| || || || || Sbjct 52277 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 52218 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | |||||||||||| Sbjct 52217 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 52158 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||||||||| |||||| Sbjct 52157 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATC 52098 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| ||||||||||| |||||||| ||| | | |||| Sbjct 52097 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGTTAATTGT 52039 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 || ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 52038 TTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 51979 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690 | || ||| | || ||||| || |||||| |||| || Sbjct 51978 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCC 51937 >seq3550 Length=137586 Score = 203 bits (224), Expect = 9e-48 Identities = 241/322 (75%), Gaps = 11/322 (3%) Strand=Plus/Minus Query 19957 TCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGA 20016 |||| ||||| ||||| || |||||||| || ||||| || || || ||||| |||||| Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 20017 TATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCC 20076 | |||| |||||| |||||| ||||||||||||||||||||||| | ||| ||| | Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 20077 CCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATG 20136 |||| || || || ||| | || | | || || |||| ||| |||||||||| |||| Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 20137 GTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA---CGGAAAGATAATCCCAACATGG 20192 |||| || |||||||| | ||||||||| ||||| || | |||| || || Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-----GG 92969 Query 20193 GCTGAT-GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251 |||||| |||||| | |||||| | || | ||||||||||| || | || ||||| Sbjct 92968 GCTGATATTATTAACCA-TGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCA 92910 Query 20252 TAACTTCCCACTTGATTTAGCT 20273 ||||||||| || || ||||| Sbjct 92909 TAACTTCCCTCTAGACCTAGCT 92888 >seq31365 Length=1132 Score = 199 bits (220), Expect = 1e-46 Identities = 240/322 (75%), Gaps = 11/322 (3%) Strand=Plus/Minus Query 19957 TCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGA 20016 |||| ||||| ||||| || |||||||| || ||||| || || || |||| |||||| Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 20017 TATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCC 20076 | |||| |||||| |||||| ||||||||||||||||||||||| | ||| ||| | Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 20077 CCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATG 20136 |||| || || || ||| | || | | || || |||| ||| |||||||||| |||| Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 20137 GTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA---CGGAAAGATAATCCCAACATGG 20192 |||| || |||||||| | ||||||||| ||||| || | |||| || || Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC-----GG 238 Query 20193 GCTGAT-GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251 |||||| |||||| | |||||| | || | ||||||||||| || | || ||||| Sbjct 237 GCTGATATTATTAACCA-TGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCA 179 Query 20252 TAACTTCCCACTTGATTTAGCT 20273 ||||||||| || || ||||| Sbjct 178 TAACTTCCCTCTAGACCTAGCT 157 >seq695 Length=285002 Score = 176 bits (194), Expect = 1e-39 Identities = 327/471 (69%), Gaps = 7/471 (1%) Strand=Plus/Minus Query 19317 AACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACT 19376 || || |||||| | | ||||||| || | ||||| ||| |||| | | || ||| Sbjct 41117 AATCGTCTTTATATCAGATGGTTTGTTGTTTTAATGATCCCTACCTTATTGACCGCAACT 41058 Query 19377 ACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAG 19436 || ||||| ||| |||||| || || | | ||||||| ||||| || ||||| Sbjct 41057 TTTTTATTTATTATCGTCTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAA 40998 Query 19437 CCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGTAGTTCCAAG 19495 || |||| || || || | ||||||||||| ||||||||||| | || || ||| | Sbjct 40997 CCTATTTCTGGATCTCTACTTTACGGAAACAAAATTATTTCTGGTGTCATTA-TTCTTAC 40939 Query 19496 CTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGT 19554 || | || || ||| |||||| | |||||||||||| |||| | | ||||| | Sbjct 40938 TTCTGTAGTTATTGGTTTGCTCTTTTACCAGATCTGGGAAGC-GGCATCCGTTGATGAAT 40880 Query 19555 GGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAG 19614 ||| |||||| |||||||| ||| | | |||| || ||||||||| | || ||||| Sbjct 40879 GGT-ATACAATGGCGGTCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTT 40821 Query 19615 CATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCG 19674 ||| ||| | ||| |||||| || | |||| ||| || ||||| Sbjct 40820 GTTACATAGGTCGTGAGTTGGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTA 40761 Query 19675 TAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGG 19733 | |||||| || | || | |||| || | |||| ||||| | | || ||| | || Sbjct 40760 TTGCATATTCAACTCCTATTGCAGCTACTACTACTGT-TTTCTTGATCTATCCAATCGGT 40702 Query 19734 CAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAAC 19784 ||||||| |||| ||||||||||||| | || ||||||| |||||| ||| Sbjct 40701 CAAGGGAATTTTTCTGATGGTATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 111 bits (122), Expect = 5e-20 Identities = 385/593 (65%), Gaps = 26/593 (4%) Strand=Plus/Minus Query 19418 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTC 19477 ||| ||||| || ||||| || |||| | || || | |||||||||| ||||||| Sbjct 68001 TATTGATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTACGGAAACAC-ATTATTTT 67943 Query 19478 TGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGC 19537 ||| || | ||| | || || || || |||| ||||| ||||||| ||| | Sbjct 67942 TGGTGCCATTATTCTGACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTTAGAATC 67883 Query 19538 CGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACT 19596 | || | | || || ||||||| ||| ||||||| ||| | | |||| || |||| Sbjct 67882 -GACATCCGTTGACGAATGGTTATGCAATGGCGGTCTTTATGAGTTAATTGTTTTACACT 67824 Query 19597 TCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAA 19656 ||||| | || ||||| || || | |||| || | | |||| | Sbjct 67823 TCTTACTTGGTGTAGCT--------TGTTATA---TGGG-----TCGTG--GTCTAGGTA 67782 Query 19657 TGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTC 19716 || | ||||| || |||||| || | || | |||| ||| |||| || Sbjct 67781 TGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCACTGTTTTCT 67722 Query 19717 TCGTTTACCCATTTGGGCAAGGGAGTTTTAG-TGATGGTATGCCTCTTGGTATCTCTGGT 19775 | | || ||| | | ||||| |||||| ||||||||||| || | ||||||| | Sbjct 67721 TAATCTATCCAATCGATCAAGGAAGTTTTTTCTGATGGTATGCTCCTAAGAATCTCTGTT 67662 Query 19776 ACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 19835 ||||| || || ||| | |||||||| || |||||| ||| ||||||| || || ||| Sbjct 67661 ACTTTCAATTTCATGGTTGTATTCCAGGCTGAACAC---ATCTTTATGCACCCATTTCAC 67605 Query 19836 ATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTG 19895 ||| | | | ||| | ||||||| || || ||| || |||||| | |||| Sbjct 67604 ATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGCATGATTCTTTG 67545 Query 19896 GTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAG 19955 || || || | |||| | |||| || | ||| || || | || || | Sbjct 67544 GTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATGAAGGTTACAGA 67485 Query 19956 TTCGGGCAAGA-TGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 ||| | ||||| ||| | || |||||||| | ||||| || || || |||| Sbjct 67484 TTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTG 67432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144308689172928