Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5102 192 9e-44 seq3550 161 2e-34 seq31365 156 7e-33 seq695 136 6e-27 seq3386 107 3e-18 seq5809 95.1 2e-14 seq4962 93.3 7e-14 seq1286 87.8 3e-12 >seq5102 Length=101622 Score = 192 bits (212), Expect = 9e-44 Identities = 262/363 (72%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 211612 ggTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || |||||||||||| | |||||||| | ||| | | | ||||| | ||||| | Sbjct 52295 GGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTAT 52237 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || ||||| || || ||||| || ||||| || || || |||||||| || |||| || Sbjct 52236 CGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 52177 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 | | || || ||||| || || |||||||| || |||| |||| || || || Sbjct 52176 TCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 52117 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 ||| ||||| || || ||||||||||| ||| | ||||||| ||| | |||||||| || Sbjct 52116 TTTGCACTTTTACCCGATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGG 52057 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| |||| | | || |||||| | | || | | |||||||| | | Sbjct 52056 TCCTTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 51997 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||||||| | |||| | |||||||| ||||||||| |||||| |||||||| || Sbjct 51996 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCC 51937 Query 211971 TGT 211973 ||| Sbjct 51936 TGT 51934 >seq3550 Length=137586 Score = 161 bits (178), Expect = 2e-34 Identities = 226/316 (72%), Gaps = 1/316 (0%) Strand=Plus/Minus Query 212237 TCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTA 212296 |||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || || | | Sbjct 93203 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 93144 Query 212297 TCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGC 212356 |||| | |||||| |||||||| | |||||| |||||| | || | | || Sbjct 93143 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 93084 Query 212357 CTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATG 212416 | || | || | ||||| || || | ||||| |||| ||| | ||||||||||||| Sbjct 93083 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 93024 Query 212417 GATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTG 212476 | ||||| || ||||||| || |||||| |||| || || ||| ||| || Sbjct 93023 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTG 92965 Query 212477 ATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACT 212536 || || ||||| || ||| ||||||||||||||||||| ||| || || || |||| Sbjct 92964 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 92905 Query 212537 TCCCACTTGACTTAGC 212552 |||| || ||| |||| Sbjct 92904 TCCCTCTAGACCTAGC 92889 >seq31365 Length=1132 Score = 156 bits (172), Expect = 7e-33 Identities = 225/316 (71%), Gaps = 1/316 (0%) Strand=Plus/Minus Query 212237 TCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTA 212296 |||| ||||| ||||| || ||||| ||||| ||||| ||||| || || | || | | Sbjct 472 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGCCCGATTGA 413 Query 212297 TCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGC 212356 |||| | |||||| |||||||| | |||||| |||||| | || | | || Sbjct 412 TCTTTCGGTATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTAGC 353 Query 212357 CTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATG 212416 | || | || | ||||| || || | ||||| |||| ||| | ||||||||||||| Sbjct 352 CCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGACTTTCAACCTAAATG 293 Query 212417 GATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTG 212476 | ||||| || ||||||| || |||||| |||| || || ||| ||| || Sbjct 292 GTTTCAATTTTAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC-CGGGCTG 234 Query 212477 ATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACT 212536 || || ||||| || ||| ||||||||||||||||||| ||| || || || |||| Sbjct 233 ATATTATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACTTAAGGCTCATAACT 174 Query 212537 TCCCACTTGACTTAGC 212552 |||| || ||| |||| Sbjct 173 TCCCTCTAGACCTAGC 158 >seq695 Length=285002 Score = 136 bits (150), Expect = 6e-27 Identities = 303/451 (67%), Gaps = 3/451 (1%) Strand=Plus/Minus Query 211615 TGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGC 211673 ||||||| |||| | |||||||| | ||| | | | ||||| | ||||| | | Sbjct 41099 TGGTTTGTTGTTTTAATGATCCC-TACCTTATTGACCGCAACTTTTTTATTTATTATCGT 41041 Query 211674 ATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATT 211733 || || || || | || | ||||| || || || |||||||| | |||| || | Sbjct 41040 CTTTATTGCTGCTCTTCTAATAGATATTGATGGTATTCGTGAACCTATTTCTGGATCTCT 40981 Query 211734 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTT 211793 | || || ||||| || || ||||||| || ||| |||| | || ||||| Sbjct 40980 ACTTTACGGAAACAAAATTATTTCTGGTGTCATTATTCTTACTTCTGTAGTTATTGGTTT 40921 Query 211794 ACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCC 211853 | ||| || | ||||||||||| ||| | ||||||| ||| | |||||||| ||||| Sbjct 40920 GCTCTTTTACCAGATCTGGGAAGCGGCATCCGTTGATGAATGG-TATACAATGGCGGTCC 40862 Query 211854 TTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTG 211913 ||| |||| | | || |||||| | | || | | ||||| || | ||| Sbjct 40861 TTATGAGTTAATTGTTTTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCGTGAGTT 40802 Query 211914 GGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGT 211973 ||||||| | || | ||||||||| |||||||| | |||| |||||| | ||| | Sbjct 40801 GGAACTTAGTTTCCATCTAGGTATGCACCCTTGGATTGCTATTGCATATTCAACTCCTAT 40742 Query 211974 ATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGG 212033 |||| || |||| ||| | | || ||| ||||||| || || || || || Sbjct 40741 TGCAGCTACTACTACTGTTTTCTTGATCTATCCAATCGGTCAAGGGAATTTTTCTGATGG 40682 Query 212034 TATGCCTTTAGGTATATCAGGAACATTCAAC 212064 |||||||||||| || || | || |||||| Sbjct 40681 TATGCCTTTAGGAATCTCTGATACTTTCAAC 40651 >seq3386 Length=136654 Score = 107 bits (118), Expect = 3e-18 Identities = 243/362 (67%), Gaps = 9/362 (2%) Strand=Plus/Minus Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || |||||||||| ||||||| |||||| |||||| | ||||| |||| ||| | Sbjct 67790 GTCTAGGTATGCGCTATTGGATCGCTGTTGCATATTCAACTCCTGTTGCAGCTGCTACCA 67731 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGG---TTCATTCTCAGACGGTATGCCTTTAG 212044 |||| ||| | | || ||| ||| ||| || || |||| || ||||||| || Sbjct 67730 CTGTTTTCTTAATCTATCCAATCGATCAAGGAAGTTTTTTCT--GATGGTATGCTCCTAA 67673 Query 212045 GTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGC 212104 | || || | || ||||| |||||| | |||||||| || ||||| |||| |||||| Sbjct 67672 GAATCTCTGTTACTTTCAATTTCATGGTTGTATTCCAGGCTGAACA---CATCTTTATGC 67616 Query 212105 ACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGC 212164 ||||||| || ||| | | | || || | |||| | ||||| || ||||| Sbjct 67615 ACCCATTTCACATGTTAAGCATAGCTAGTGTATTCGACAACTCCCTATTCAATGTTATGC 67556 Query 212165 ACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACT 212224 | | |||| | || || ||| | ||| | ||||||| || | || Sbjct 67555 ATGATTCTTTGGTAACCTCTAGTTTGATCAGGAAAACCACAAAAAATGAATTTATTAATG 67496 Query 212225 ATGGTTACAAGTTCGGACAAGA-AGAAGAGACATATAACATCGTTGCTGCACATGGATAC 212283 | ||||||| ||| | ||||| ||| | || ||||| ||| | ||||| ||||| || Sbjct 67495 AAGGTTACAGATTCAGTCAAGAGGGAAAAAACTTATAATATCATAGCTGCTCATGGTTAT 67436 Query 212284 TT 212285 || Sbjct 67435 TT 67434 >seq5809 Length=90575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||||| ||||||||||| ||||| || ||||| |||| || || || || ||||| Sbjct 12636 TGGGATTCTTTTCAATCACGAGTCTCCGAGGAGAGGAGAGAATTTCGTGACCCGGAAGAT 12695 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 ||| | | | | |||| |||| |||||||| | | | | | || ||||| Sbjct 12696 TACTCGGGCCGTTGGGAGGATCAAGATTGGGTTACAGAACAAATTGTTTTTGGGGAATCT 12755 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | | ||| |||||||||||| || |||||| || ||||| |||||| | ||| | Sbjct 12756 TCAAGCTTCGAGGGATTGGGGTTTTGCTGGGGATTACGTGGAAGCTATGTGGATGATGCT 12815 Query 194126 GCAACAGGATGAACCCGATGATTATGT 194152 ||||| || | || || ||||| || Sbjct 12816 TCAACAAGAGAAGCCGGACGATTACGT 12842 >seq4962 Length=163567 Score = 93.3 bits (102), Expect = 7e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||||| ||||||||||| || || || || || |||| || || || || ||||| Sbjct 88963 TGGGATTCTTTTCAATCACGAGTCCCCGAGGAGGGGAGAGAATTTCGTGACCCGAAAGAT 88904 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 ||| | | | | | |||| |||| ||||| || | | | | | || ||||| Sbjct 88903 TACTCGGGCTGTCGGGAGGATCAAGATTGGGTTACAAAACAAGTTGTTTTTGGGGAATCT 88844 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | | ||| |||||||||||| || |||||| || ||||| |||||| | ||| | Sbjct 88843 TCAAGCTTCGAGGGATTGGGGTTTTGCTGGGGATTACGTGGAAGCTATGTGGATGATGCT 88784 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||| || | || || ||||| ||| | || || Sbjct 88783 GCAACAAGAGAAGCCGGACGATTACGTGGTGGCGAC 88748 >seq1286 Length=253285 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||||| ||||||||||| || || || ||||| |||| ||||| || || || || Sbjct 217230 TGGGATTCTGTTCAATCACGAGTCGCCGAGGAGAGGAGAGAATTTTGTGACCCGGAAAAT 217171 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 ||| | | | | |||| ||||||| || | | | | | | || ||||| Sbjct 217170 TACTCGGGCCGTTGGCAGGATCAAGATTGGATTGCAAAGCAAGTTGTTTTTGGGGAATCT 217111 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | ||| |||||||||||| || |||||| || ||||| |||||| | ||| | Sbjct 217110 GCAAGCTTCGAGGGATTGGGGTTTTGCCGGGGATTACGTGGAAGCTATGTGGATGATGCT 217051 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||| || | || || ||||||||| | || || Sbjct 217050 GCAACAAGAGAAGCCAGACGATTATGTGGTGGCGAC 217015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806773002033280